Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021224 [exp] 502 / 9e-173 AT5G43630 342 / 1e-103 zinc knuckle (CCHC-type) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G076700 [exp] 81 / 5e-17 AT5G43630 234 / 2e-64 zinc knuckle (CCHC-type) family protein (.1) Potri.008G162500 [exp] 70 / 2e-13 AT5G43630 237 / 3e-65 zinc knuckle (CCHC-type) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022215 pacid=23139445 polypeptide=Lus10022215 locus=Lus10022215.g ID=Lus10022215.BGIv1.0 annot-version=v1.0 ATGAACGATGATGAGAACAGCATAGCATTTAATGATTTTGGACTGCTTTTGAATTACTCTAATCGATTTATTCAAAGGAGATTGAACAGCGCTGAAGCTT CAGGTGCAGGTACAAATGCAGATCCAACTGTTGGAATGGCATTAAGAGCCAGTGACCCGTTGTCTGAGCTAGTTTGGTCCCCACGGAAAGGCTTGACTGT CAAATGTGCTGATCGCAGCTTCTTCAGCAGAAACACATCGAGATCTCGAGACAATATTGTAATGGGTTCAAGCAGTGACACCAAACCTTTGAATGAAGCG GATTCTGTCAGAATGGATGTTAATCTAACAAGTGAAGTTCCTGAAAGACATCATCAGTTCATAAATATCCCATCAAATGATGTGGAAGCCATGCCATGTA GCGGATCTGGCCATGACCTGAACGCAGCTGAGCACAAATCTGATGTGGCACAGCCCAGGCAAACTTTTCAGGAACCTGTTAAGGTAGTAAGTGATATCGG TGGAGGAAGCACAGAAGTGGGAAAACAAGGGGAATGCAAAGCCAGCAGCTCTAAAATGAAGACTGCAACCTTCTCAGGAAAAGTAGGTGAAGAAGAATCA CCTTGCTCCGTGGAGAAGGATGTTTGTGTAGTTCGTCCACTGGAAAGATTGGAGTCGTCCGATGAGAATGACCCGGGAAGTTCACAGGGTCAAAGTGTTT GCGTTGAGAAAAATAAACTTGTGGTGGCAATATCTACCAAGAGACAAGAGCATCAGGTGGATGAGATTCCTGAAGATGACAGGCTGGCAGTTACAGAATC TTATCTAAAGGGAAAAGGAGTTGGAACTTTGAGGAACAGTTAA
AA sequence Show only first row Show all	>Lus10022215 pacid=23139445 polypeptide=Lus10022215 locus=Lus10022215.g ID=Lus10022215.BGIv1.0 annot-version=v1.0 MNDDENSIAFNDFGLLLNYSNRFIQRRLNSAEASGAGTNADPTVGMALRASDPLSELVWSPRKGLTVKCADRSFFSRNTSRSRDNIVMGSSSDTKPLNEA DSVRMDVNLTSEVPERHHQFINIPSNDVEAMPCSGSGHDLNAAEHKSDVAQPRQTFQEPVKVVSDIGGGSTEVGKQGECKASSSKMKTATFSGKVGEEES PCSVEKDVCVVRPLERLESSDENDPGSSQGQSVCVEKNKLVVAISTKRQEHQVDEIPEDDRLAVTESYLKGKGVGTLRNS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Lus10022215 [exp]	0	1
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Lus10021224 [exp]	1.0	0.8843
AT5G62960			unknown protein		Lus10014556 [exp]	1.4	0.8288
AT5G19010		ATMPK16	mitogen-activated protein kina...		Lus10021945 [exp]	2.2	0.8170
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Lus10022216 [exp]	4.2	0.8146
AT3G50740		UGT72E1	UDP-glucosyl transferase 72E1 ...		Lus10041715 [exp]	7.3	0.8095
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10011259 [exp]	13.2	0.7650
AT5G24850		CRY3	cryptochrome 3 (.1)		Lus10020878 [exp]	14.8	0.8193
AT2G38840			Guanylate-binding family prote...		Lus10024841 [exp]	14.8	0.7791
AT4G32770		ATSDX1, VTE1	tocopherol cyclase, chloroplas...		Lus10011696 [exp]	15.0	0.7623
AT4G25290			DNA photolyases;DNA photolyase...		Lus10031137 [exp]	19.3	0.8101

Compare expression of checked genes

Lus10022215 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.