Plant FIBer expression Database

Lus10022216 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G43630 227 / 2e-64 TZP zinc knuckle (CCHC-type) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021224
[exp]
1082 / 0 AT5G43630 342 / 1e-103 zinc knuckle (CCHC-type) family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G162500
[exp]
390 / 2e-123 AT5G43630 237 / 3e-65 zinc knuckle (CCHC-type) family protein (.1)
Potri.010G076700
[exp]
384 / 2e-121 AT5G43630 234 / 2e-64 zinc knuckle (CCHC-type) family protein (.1)
Potri.008G162150
[exp]
343 / 2e-107 AT5G43630 191 / 1e-50 zinc knuckle (CCHC-type) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03126 Plus-3 Plus-3 domain
Representative CDS sequence
>Lus10022216 pacid=23139507 polypeptide=Lus10022216 locus=Lus10022216.g ID=Lus10022216.BGIv1.0 annot-version=v1.0
ATGGTGAATGGATTCTTGAAAACAACTCAGCAAGAGACACAACCTTCATTTCCACTTATTGTTGGTAACCAAGATCCCGCCTGTACAAATACTGGATTCC
AGTCCATTTTTCAGTCCTTATACTGTCCAAAGAAGATGGCTGGTTTTATGGATCCGGGTCATCAAAGAGAAGGTAGACCGGATAGCCAAATGTGTGACGT
TAATGCTACTCCGATAGCCTGTCGTCCAGTGAGTGGTAATATCTTCAAACCATTTCTTCCATCTTCAGACAAACATGGTGATTCTATGCCTAGCATCAAT
GTAGTAGCTGAGAAAAACAGCTCATTTCAAGCTAAAGATTCACGCAGTTCAGAAAGTTACAAGCAGAGGAATGGAACAGACTTGGACAAAGCAAGGATTA
ACATTGCTCATAAAGTTGACCCTTTTGCAAGCACCTGGATAACTCGCTTTACGCCGAAATCTTTTGCTTGTCCAGCAGACCAAAGTGTGGTGGTCTCTAA
CAAGAGCACAGGAGAGCTTCATGCCTGTTCCCCTGAGAGAATGCCAGCCAAATCTCACTTGCAAAACCTTCTTAATTCTTCCAAAGCGCGCTCAATAATG
GAGACAGACGAGCAATCACATGTAAACCCTTGTTCTACTAGCGTGGATGCTTCATTTAGTTTCTATAAAGTGAAGAGCCACCTTGGCGAGACTTCCTCAA
GTAAACTGAATCCGATCCCACCTACGGAACGACTCGCAAATTCAGAGGCAATGGCTTCTGTGTTTGCAAGGAGGTTGGATGCCCTCAAACACATCATTCC
TTCAGATGGTGGTGATTTGAACGATAAAGCTCCTTCGAGTATGATCTGTTTCTTTTGTGGCACGAGAGGTCACCATCTACGAGATTGTTCGGAGATCACA
GATTGTGAGCTTGAGGACCTCTTGACGAACATTACTACATATGAAGGAAGAGAAGAGCCGCCATGTTTCTGCATCAGATGCTTTCAGCTCAATCATTGGG
CTGTTGCATGCCCTAGAGCGCCAGGCAGGGCAAGTCTTCAAGAAGAATGTGACACCCCTCAACTCACTGGCATTGGTGCAGTCAAAACACAGCTGAATTC
AAGAAAGGAAGATAGCAAAAGGTTGTTAGATAGCAGGTCTGGCCAACATGCAGTTTCCAGTGGGACTACAGCTTGTGGAATGAAGAACAAGATGTTCTAT
AAGACCACCAGTACTAGTAGAAAACTCCTAGTCGCTTCTTCAAGCTCTGGGGCTACCAAATTAAAGGGTATTCAGATGCATCCCTTGATCAAGTCCGACA
TTGTAGATGTTCCGAAAGGAATTTGCGACATTGTAAAAAGCCTACGTTTGTCTCGGACAGACATACTAAGGTTAGTTAGACAACTCCACAATTGGCGGTA
TAAGGTAAGGTTTGGCATCTCGAATCATGTTTGTCCAGGAAAATTGAATTGGGGTGAGCTGAAGAAAGTTGAGTTGAGATGGATGAATTCTGGATTGCCA
ATCTCACAGCTTGATGGTTGTTACCTTCGGCTGCGGCTAGGAAAATGGCAAGCTGGATTTGGGGGAAGTGGCTACCATGTAGCTTGCATAACAAGTGGAG
AAGGGACGAGCGGATCACAACCAAAGTTCAGAAGTTGTGCGAGTGGATCACAGTCCAATTCCAGAAGTTGTGTACCTGTAGATGTTGGTGGCGTCAGATG
TCTAGTGGAATCTCAGTACGTCTCCAACAATGATTTCCTCGAGGATGAGCTCATGTCATGGTGGTCTGCAACGCTGAAGGGAAACAAGGTACCATGTGAA
GAAGACTTGAGACTGAAGCTTAAAGATAAGCAAAGGTTGGGGCTTTGA
AA sequence
>Lus10022216 pacid=23139507 polypeptide=Lus10022216 locus=Lus10022216.g ID=Lus10022216.BGIv1.0 annot-version=v1.0
MVNGFLKTTQQETQPSFPLIVGNQDPACTNTGFQSIFQSLYCPKKMAGFMDPGHQREGRPDSQMCDVNATPIACRPVSGNIFKPFLPSSDKHGDSMPSIN
VVAEKNSSFQAKDSRSSESYKQRNGTDLDKARINIAHKVDPFASTWITRFTPKSFACPADQSVVVSNKSTGELHACSPERMPAKSHLQNLLNSSKARSIM
ETDEQSHVNPCSTSVDASFSFYKVKSHLGETSSSKLNPIPPTERLANSEAMASVFARRLDALKHIIPSDGGDLNDKAPSSMICFFCGTRGHHLRDCSEIT
DCELEDLLTNITTYEGREEPPCFCIRCFQLNHWAVACPRAPGRASLQEECDTPQLTGIGAVKTQLNSRKEDSKRLLDSRSGQHAVSSGTTACGMKNKMFY
KTTSTSRKLLVASSSSGATKLKGIQMHPLIKSDIVDVPKGICDIVKSLRLSRTDILRLVRQLHNWRYKVRFGISNHVCPGKLNWGELKKVELRWMNSGLP
ISQLDGCYLRLRLGKWQAGFGGSGYHVACITSGEGTSGSQPKFRSCASGSQSNSRSCVPVDVGGVRCLVESQYVSNNDFLEDELMSWWSATLKGNKVPCE
EDLRLKLKDKQRLGL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G43630 TZP zinc knuckle (CCHC-type) famil... Lus10022216
[exp]
0 1
AT1G78510 SPS1 solanesyl diphosphate synthase... Lus10005570
[exp]
1.4 0.8630
AT5G13030 unknown protein Lus10031224
[exp]
1.4 0.8411
AT5G43630 TZP zinc knuckle (CCHC-type) famil... Lus10022215
[exp]
4.2 0.8146
AT4G16563 Eukaryotic aspartyl protease f... Lus10008513
[exp]
4.9 0.7882
AT1G78510 SPS1 solanesyl diphosphate synthase... Lus10013703
[exp]
6.0 0.8015
AT5G43630 TZP zinc knuckle (CCHC-type) famil... Lus10021224
[exp]
8.9 0.7896
AT1G10830 Z-ISO1.2, Z-ISO... 15-cis-zeta-carotene isomerase... Lus10021965
[exp]
9.5 0.7611
AT5G62960 unknown protein Lus10014556
[exp]
10.6 0.7694
AT3G24300 ATAMT1;3, AMT1;... ammonium transporter 1;3 (.1) Lus10004761
[exp]
14.5 0.7197
AT4G32770 ATSDX1, VTE1 tocopherol cyclase, chloroplas... Lus10009501
[exp]
14.7 0.7335

Lus10022216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.