Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04280 360 / 9e-122 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G30630 341 / 3e-114 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G06750 337 / 7e-113 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021226 [exp] 551 / 0 AT1G04280 445 / 2e-154 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10041167 [exp] 419 / 3e-145 AT2G30630 524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10021885 [exp] 408 / 2e-141 AT2G30630 442 / 7e-152 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10033855 [exp] 348 / 5e-117 AT2G30630 804 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10014744 [exp] 337 / 4e-112 AT2G30630 793 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10021884 [exp] 107 / 1e-26 AT2G30630 224 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G162000 [exp] 388 / 1e-132 AT1G04280 549 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G043000 [exp] 372 / 2e-126 AT1G06750 777 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G220000 [exp] 365 / 5e-124 AT1G06750 803 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G162400 [exp] 365 / 6e-124 AT1G04280 491 / 4e-170 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF06414 [flax] [poplar] Zeta_toxin Zeta toxin
Representative CDS sequence Show only first row Show all	>Lus10022217 pacid=23139410 polypeptide=Lus10022217 locus=Lus10022217.g ID=Lus10022217.BGIv1.0 annot-version=v1.0 ATGAAAGCAATCGGAATAAGTAGTAGTGATCGTCAAGCCCATCGTAACGATGTTATGGTCCCCGCCGCCCACTGCGACCGGAGCCCTGTCCTTCTCTTCA TGGGCGGCGGCATGGGTGCCGGCAAGAGCACCGTCATCAAGGACATCCTCAAAGAGTCATTTTGGGGTGGGGCAGCTGCAAACGCCGTCGTAGTGGAGGC AGATGCGTTCAAGGAGTCCGATGTTATTTACAAAGCTCTCAACTCAATGGGACACCACGACGACATGCTTCCAACCTCTGAACTCGTTCACCAATCGTCA ACTGATGCGGCGTCGTCGTTACTAGTGACGGCACTTAACGAAGGGCGGGACGTGATAATGGACGGCACCTTGTCATGGGAACCCTTCGTGGAGCAAACCA TCGAGATGGCGCGTAACGTCCACAAACGCCGTTACCGCATGGGAGTGGGCTACAAGGTGGACGAAAACGGTACTACCGTAGCAGAAAATTACTGGGAACC AGCAGATGATGAGGTAAATAATGGAAATAATGGAGAAATGGCCGGATTATTATTAACAAAGAGACCCTACAGAATCGAGATGGTTGGTGTGGTTTGCGAC GCATATCTAGCCGTTGCTAGAGGAATCAGGAGAGCTATAATAACGGGGAGGGCAGTGAGGGTAAATGCACAGCTGAAGTCCCACAAGAGATTCGCGGATG CGTTCCCGAGGTACTGTCAACTTGTGGATAATGCCAGACTTTACTGCACAAACACCGTAGGAGGTCCCCCAAAGCTGATAGCCAGGAAGGATGGCGGGGA GAACACGATGTTGATCGATCCGGAGCATTTTAAATGTTTGGGGGATTTGGCGAGGTTGAATCCTAATGCAGAATCTGTGTATCAACTTTACGGCAAAACT AGCATTATTCACGGCCCCGGCTCGGGTTGGAAACAAGTTGTTTTCAACCCTTCCAGGCCCAGCTTTCAGGCAGAGCTCAAAACAGTCATCCAACAAATCG AAAGCTTGTCAAGATAG
AA sequence Show only first row Show all	>Lus10022217 pacid=23139410 polypeptide=Lus10022217 locus=Lus10022217.g ID=Lus10022217.BGIv1.0 annot-version=v1.0 MKAIGISSSDRQAHRNDVMVPAAHCDRSPVLLFMGGGMGAGKSTVIKDILKESFWGGAAANAVVVEADAFKESDVIYKALNSMGHHDDMLPTSELVHQSS TDAASSLLVTALNEGRDVIMDGTLSWEPFVEQTIEMARNVHKRRYRMGVGYKVDENGTTVAENYWEPADDEVNNGNNGEMAGLLLTKRPYRIEMVGVVCD AYLAVARGIRRAIITGRAVRVNAQLKSHKRFADAFPRYCQLVDNARLYCTNTVGGPPKLIARKDGGENTMLIDPEHFKCLGDLARLNPNAESVYQLYGKT SIIHGPGSGWKQVVFNPSRPSFQAELKTVIQQIESLSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04280			P-loop containing nucleoside t...		Lus10022217 [exp]	0	1
AT3G10520		ATGLB2, ARATHGL...	NON-SYMBIOTIC HAEMOGLOBIN 2, A...		Lus10037926 [exp]	1.4	0.7868
AT4G30660			Low temperature and salt respo...		Lus10036592 [exp]	2.8	0.7435
AT5G05670			signal recognition particle bi...		Lus10030593 [exp]	7.0	0.7458
AT4G18910		ATNLM2, NIP1;2,...	NOD26-LIKE INTRINSIC PROTEIN 2...		Lus10007322 [exp]	7.1	0.7643
AT3G11430		ATGPAT5, GPAT5	glycerol-3-phosphate acyltrans...		Lus10017794 [exp]	10.2	0.7563
AT5G07040			RING/U-box superfamily protein...		Lus10005389 [exp]	11.8	0.7470
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10016017 [exp]	14.5	0.6810
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10002272 [exp]	18.5	0.7787
AT2G44525			Protein of unknown function (D...		Lus10007556 [exp]	18.6	0.6868
AT5G20990		B73, CNX1, SIR4...	SIRTINOL 4, CO-FACTOR FOR NITR...		Lus10001152 [exp]	20.8	0.6696

Compare expression of checked genes

Lus10022217 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.