Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64560 507 / 1e-177 MRS2-2, ATMGT9 magnesium transporter 9 (.1.2) AT5G09690 469 / 3e-162 MRS2-7, ATMGT7 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) AT1G80900 285 / 4e-90 MRS2-10, ATMGT1 magnesium transporter 1 (.1) AT1G16010 285 / 4e-90 AtMRS2-1, AtMGT2, MRS2-1, MGT2 magnesium transporter 2 (.1.2.3) AT5G09720 280 / 6e-90 Magnesium transporter CorA-like family protein (.1) AT3G58970 283 / 4e-89 MRS2-4, MGT6 magnesium transporter 6 (.1) AT5G09710 263 / 4e-83 Magnesium transporter CorA-like family protein (.1) AT2G03620 224 / 3e-67 AtMRS2-5, AtMGT3, MRS2-5, MGT3 magnesium transporter 3 (.1.2) AT4G28580 205 / 7e-60 MRS2-6, ATMGT5 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORT 5, magnesium transport 5 (.1) AT3G19640 177 / 9e-49 MRS2-3, MGT4 magnesium transporter 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008803 [exp] 613 / 0 AT5G64560 570 / 0.0 magnesium transporter 9 (.1.2) Lus10021887 [exp] 569 / 0 AT5G64560 574 / 0.0 magnesium transporter 9 (.1.2) Lus10024860 [exp] 415 / 3e-141 AT5G09690 478 / 3e-169 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) Lus10014353 [exp] 280 / 5e-88 AT1G16010 745 / 0.0 magnesium transporter 2 (.1.2.3) Lus10026063 [exp] 280 / 9e-88 AT1G16010 744 / 0.0 magnesium transporter 2 (.1.2.3) Lus10015459 [exp] 253 / 1e-77 AT3G58970 560 / 0.0 magnesium transporter 6 (.1) Lus10008804 [exp] 236 / 9e-75 AT5G43650 94 / 1e-23 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10041169 [exp] 206 / 7e-63 AT5G64560 205 / 8e-66 magnesium transporter 9 (.1.2) Lus10037081 [exp] 206 / 9e-61 AT2G03620 479 / 6e-170 magnesium transporter 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G161400 [exp] 533 / 0 AT5G64560 552 / 0.0 magnesium transporter 9 (.1.2) Potri.010G077900 [exp] 518 / 0 AT5G64560 531 / 0.0 magnesium transporter 9 (.1.2) Potri.001G043200 [exp] 285 / 4e-90 AT1G16010 637 / 0.0 magnesium transporter 2 (.1.2.3) Potri.003G183600 [exp] 281 / 2e-88 AT1G16010 699 / 0.0 magnesium transporter 2 (.1.2.3) Potri.006G081700 [exp] 267 / 6e-83 AT3G58970 538 / 0.0 magnesium transporter 6 (.1) Potri.007G098200 [exp] 241 / 1e-73 AT1G80900 301 / 1e-98 magnesium transporter 1 (.1) Potri.010G158100 [exp] 226 / 1e-67 AT2G03620 417 / 2e-144 magnesium transporter 3 (.1.2) Potri.007G098000 [exp] 224 / 4e-67 AT1G80900 252 / 2e-79 magnesium transporter 1 (.1) Potri.008G096200 [exp] 223 / 1e-66 AT2G03620 438 / 1e-152 magnesium transporter 3 (.1.2) Potri.009G086300 [exp] 178 / 2e-49 AT3G19640 431 / 4e-148 magnesium transporter 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01544 [flax] [poplar] CorA CorA-like Mg2+ transporter protein
Representative CDS sequence Show only first row Show all	>Lus10022218 pacid=23139489 polypeptide=Lus10022218 locus=Lus10022218.g ID=Lus10022218.BGIv1.0 annot-version=v1.0 ATGAGTTGGATTCTGGTCGACTCCACTGGCCAAGGCACCATCCTCGATGCTGACAAGCATGCAATCATGCACCGTGTTCAGATTCACGCGCGCGATCTCC GCATCCTCGATCCCTTGCTCTCTTACCCCTCCACAATTCTCGGCCGAGAGAGGGCCATTGTTTTGAACTTGGAGTACATCAAGGCGATTATCACTGCTGA GGAGGTACTGCTGAGAGATCCATCGGATGAACATGTTAGTCCTGTTGTCAAAGAACTTCAGAGGCGATTACCACTTGCAAATGACACTCAGCAAGAAGGC CAATCAAATGATAAAAGCCAATGCACCAAGCAAACTGATGCTGAAGGGGGTGAAGAGGATGAATCTCCTTTTGAATTCCGTGCTCTGGAGGTTGCTTTGG AAGCCATTTGTATTTTTCTAGCTGAACGCACGACAGAATTAGAGACTGCTGCTTACCCTGCACTGGATGAGCTAACCTCCAAGATCAGCAGCCGCAATTT GGATAGAGTTCGTAAACTGAAGAGTGCAATGACAAGGTTGACTGCTCGGGTTCAAAAAGTCCGTGATGAGCTGGAACAGTTACTGGATGATGATGATGAT ATGGCTGACCTTTACTTGTCGAGGAAGATGGCTGGCTCATCTTCACCAGTTAGTGCCTCAGGTGTCGATTGGTTTTCTGCTTCCCCTACGATAGGTTCTA AAATCTCTAGGGCAAGTAGGGCAAGTGTCGCTACAGTTCGTGATGACGATAATGACGTTGAGGAGCTTGAGATGTTACTAGAGGCTTACTTTATGCAAAT CGATGGCACGCTGAACAAATTAACCACGTTGCGAGAATACATTGATGATACTGAGGATTACATCAACATTCAGCTTGACAACCATCGAAATCAGCTTATT CAGTTGGAGTTGTTTCTCAGTTCAGGCACCGTGTGTTTGTCAATTTATTCTTTGGTGGCCGGAATATTTGGTATGAATATCCCCTACACATGGAACGCTC ACTATGGATATGTCTTCAAATGGAAGCAGTGCCTGTTATTCATAGCCGTTAAGATAAAGCTGAGAGCTTCATTGCTTTTTCAGAAGGTATCTATGGATGA TGATTTCTTGGTTGACGAATTGAGCCTGGTTGTAAAAGGCCGAACCCATCCTCCTAACCAATCTTTCGCACCATATTCCAACGGCGGGAACAGAGAGGAT TATTCAAGTAATAATGTAGCCCCAGCAACCAACTTGAACAGGAGAATGATGGAATTCCAGAAGACAAACTGGGAATTCAATGGGAAGAATGTGGACAGCA GCAGCAGCAGCAAGCAACATTTGTCGTTTCGGCATATGATGAACGAGAGACTGAGAAGGGAGGAGGAGAAGGAAGGCTACTCTTCTCTTCTCTCCATGTT GCCCTCCGACACTAAGAAGAACAAGAACGCGATTGTGACAGGGGCGACGAGGAGGATAGAAGAGATTGAGGGATACAAGCAGATGCTGGAAAGAAGAATC ATGGACCTCCAAGAAGCAGAAGAAGCTCAATCGTCGACTTTGGATCGCAGAGTTGCGAAGAAGAAGGTGAAGATCAAAGTTGTGAGTACAACATCATCTG GGTTAGAAGGTTCAATGTTGGAGGTTCTATACGAGTTGAAGGCGTTGGGTGCTGAACCAACCACTATCAAATCCAAGATTTCACGTCAGGGGTTTGAGGC CGTCATGGATGTGGAAACTCAGAGCGATGCTGAGAAGAAGATTGTTTCTGGTATTCCCGGGTGCTTTGTCTTGGAAAGCTAG
AA sequence Show only first row Show all	>Lus10022218 pacid=23139489 polypeptide=Lus10022218 locus=Lus10022218.g ID=Lus10022218.BGIv1.0 annot-version=v1.0 MSWILVDSTGQGTILDADKHAIMHRVQIHARDLRILDPLLSYPSTILGRERAIVLNLEYIKAIITAEEVLLRDPSDEHVSPVVKELQRRLPLANDTQQEG QSNDKSQCTKQTDAEGGEEDESPFEFRALEVALEAICIFLAERTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDD MADLYLSRKMAGSSSPVSASGVDWFSASPTIGSKISRASRASVATVRDDDNDVEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLI QLELFLSSGTVCLSIYSLVAGIFGMNIPYTWNAHYGYVFKWKQCLLFIAVKIKLRASLLFQKVSMDDDFLVDELSLVVKGRTHPPNQSFAPYSNGGNRED YSSNNVAPATNLNRRMMEFQKTNWEFNGKNVDSSSSSKQHLSFRHMMNERLRREEEKEGYSSLLSMLPSDTKKNKNAIVTGATRRIEEIEGYKQMLERRI MDLQEAEEAQSSTLDRRVAKKKVKIKVVSTTSSGLEGSMLEVLYELKALGAEPTTIKSKISRQGFEAVMDVETQSDAEKKIVSGIPGCFVLES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09690		MRS2-7, ATMGT7	ARABIDOPSIS THALIANA MAGNESIUM...		Lus10022218 [exp]	0	1
AT3G19830		NTMCTYPE5.2 ,NT...	Calcium-dependent lipid-bindin...		Lus10029073 [exp]	8.1	0.8345
AT5G47390	MYB		myb-like transcription factor ...		Lus10004384 [exp]	14.9	0.8254
AT1G30135	ZIM	TIFY5A, JAZ8	jasmonate-zim-domain protein 8...		Lus10038506 [exp]	16.1	0.8067
AT1G12610	AP2_ERF	DDF1, DREB1F, F...	DWARF AND DELAYED FLOWERING 1,...		Lus10029602 [exp]	20.0	0.8084
AT2G33500	CO	COL14	B-box type zinc finger protein...		Lus10041526 [exp]	21.6	0.7415
AT1G12610	AP2_ERF	DDF1, DREB1F, F...	DWARF AND DELAYED FLOWERING 1,...		Lus10029601 [exp]	22.7	0.8006
AT4G38270		GAUT3	galacturonosyltransferase 3 (....		Lus10026546 [exp]	23.5	0.8028
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Lus10009798 [exp]	28.5	0.7798
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10006166 [exp]	29.3	0.7951
AT2G17140			Pentatricopeptide repeat (PPR)...		Lus10013832 [exp]	29.8	0.7792

Compare expression of checked genes

Lus10022218 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.