Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43670 1061 / 0 Sec23/Sec24 protein transport family protein (.1) AT3G23660 682 / 0 Sec23/Sec24 protein transport family protein (.1.2) AT1G05520 661 / 0 Sec23/Sec24 protein transport family protein (.1) AT2G21630 608 / 0 Sec23/Sec24 protein transport family protein (.1) AT4G14160 568 / 0 Sec23/Sec24 protein transport family protein (.1.2.3) AT4G01810 95 / 8e-20 Sec23/Sec24 protein transport family protein (.1) AT2G27460 47 / 6e-05 sec23/sec24 transport family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008800 [exp] 1223 / 0 AT5G43670 912 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10008801 [exp] 1066 / 0 AT5G43670 809 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10021963 [exp] 670 / 0 AT1G05520 1321 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10041256 [exp] 662 / 0 AT1G05520 1319 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10019516 [exp] 614 / 0 AT2G21630 1093 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10043359 [exp] 613 / 0 AT2G21630 1098 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10021964 [exp] 233 / 1e-69 AT1G05520 486 / 9e-168 Sec23/Sec24 protein transport family protein (.1) Lus10010078 [exp] 101 / 1e-21 AT4G01810 1317 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10007190 [exp] 101 / 1e-21 AT4G01810 1314 / 0.0 Sec23/Sec24 protein transport family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G078200 [exp] 1228 / 0 AT5G43670 1136 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.008G161300 [exp] 1227 / 0 AT5G43670 1115 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.019G003100 [exp] 665 / 0 AT3G23660 1181 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Potri.001G307400 [exp] 660 / 0 AT1G05520 1235 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.014G178500 [exp] 658 / 0 AT2G21630 1028 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.002G238500 [exp] 419 / 9e-138 AT2G21630 767 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.002G187100 [exp] 97 / 2e-20 AT4G01810 1352 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.014G112600 [exp] 95 / 8e-20 AT4G01810 1364 / 0.0 Sec23/Sec24 protein transport family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0092 [flax] [poplar] ADF PF00626 [flax] [poplar] Gelsolin Gelsolin repeat CL0092 [flax] [poplar] PF04810 [flax] [poplar] zf-Sec23_Sec24 Sec23/Sec24 zinc finger CL0128 [flax] [poplar] vWA-like PF04811 [flax] [poplar] Sec23_trunk Sec23/Sec24 trunk domain CL0128 [flax] [poplar] PF08033 [flax] [poplar] Sec23_BS Sec23/Sec24 beta-sandwich domain CL0128 [flax] [poplar] PF04815 [flax] [poplar] Sec23_helical Sec23/Sec24 helical domain
Representative CDS sequence Show only first row Show all	>Lus10022219 pacid=23139442 polypeptide=Lus10022219 locus=Lus10022219.g ID=Lus10022219.BGIv1.0 annot-version=v1.0 ATGGATTTCGTGGAGCTGGAAGCGACCGAAGGTCTGCGATGGTCATGGAACGCTTGGCCGACGACCAAATCGGAGGCGGCCTCACTGGTAGTCCCGCTAA GTATCATGTGCACGCCGTTGATGCAGTCTTCGGAGCTCCCGATCCTTCCCTACGAGCCTCTCCACTGCAGTCGATGCAATTCCGTCCTGAATCCTTACGC CAGGGTCGATTACCAGTCCCGCATTTGGTGCTGCCCATTCTGCTTCCACCGCAACACGTTCCCCATTTCTTACTCTGGAATCGGCGAGACTAATCTCCCC GCCGAGCTCTTCCCTACCTACAGCGCAGTCGAGTACAAGATCGATAAGAAGGATGCCAAGATTAGTGCTAGTTCACAGTTAGGTTACCGCTGGTCTCCTC AAGGTTTGCCTTCGTCTAATGGTTCGCTTTCGTCGATGGCGTCGATCGGGTCTCCCAGGGTTGGGATGGGCGGCGGCGGAGGTGGAGGTGGAGGCGGTGG TGATTTTAGGAAGGTAGGGCCTGCTTTCGTGTTTGTTGTGGATGCTTGCACCGAGGATGAGGAGCTGAGTGCGATTAAGAGTGAGCTGCTGTTGGTTGTG GAGCAGCTGCCAGAGAATGCACTGGTCGGTTTGGTTGCGTTTGATTCAATGGTGAGGGTTACTGATCTAGGTTTCTCTGACTGCTCCAGAGCTATTGTGT TTCATGGTGAACGTGAGCTCTCATCTCAGCAGACTCAACAATTTCTGGGTTTGCACATCAGAAAGCAGCAGCAACAACATGGTGGCACACAATTTATCCA AAAACAGGGATTTTTGCTTCCTGTTTCTGAATGTGATTTCAACATAACAACTGCAATTGAAGAACTTCGTTCCTTATCTGTTGTGAAGACCGGCCATCGG CCTCAAAGGTGCACTGGAGCAGCAATAGCTGTTGCTGTTGGACTACTTGAAGGTTGTTGTGTGAATACTGGATCCAGGATTATGGTGTTCACGTCTGGAC CTGCAACTTTAGGCCCCGGTGTTGTGGTGGACTCTGATCTCAGTAGTATGATTAGGACTCACCAGGATCTCATCAATGGCCGTGCACCATACTATACAAA CTCTTGCAGCTTCTACAACAACTTGTCTACGCGACTATCGGATGCTTCTATTGTTCTTGATTTATTTGCTTGTTCTCTTGATCAAGTTGGAGTAGCCGAG CTCAAAGTTCCCGTTGAGCAGTCGGGTGGATTCTTGCTCTTGGGCGAGCTATTTGATTCGCATCAGTTCCGAAAATGCCTGCGCCACATATTCAGTCGTG ATGACGACAGGAACTTGAAGATGCATTTTGATGCAACAATCGAAGTGGTGACCACTAAAGATGTGAAAATCTGTGGAGCACTTGGGCCTTGTATATCCCT TGGGAAAAAGAATGATTTAGTAAGTGAGCATGAAATAGGAGAGGGCGGAACATACTTGTGGAACTTGGGCACTCTAACAAATAGAACCTGCATAGCTTTC TTCTTTGAAGTGGGGAATGAGCAGAAGGCCCATCCCGGGTCTGCTTTTTTGATACAGTTTATAACACGGTTTCGTCGTGGGAACTTGGGAGTCTATAAAA GGGTTACAACCGCTGCAAGAAGGTGGGTTACGGTAAGCAAAGCAGCAGACATCAGTGCTGGTTTTGATCAGGAAGCAGCAGCAGCTGTAATGGGCAGACT TGCCATCCACAGAGCAGAGAAATGTCACGCGAGAGATGTTATCAGATGGCTCGATGATAACCTAATTACTTTTGCTTCAAAGTTTGGAGACTATATCGAG GAAGATCCATCGTCCTTCCGACTTTCGTCAAGTTTCTCTCTTTATCCTCAGTTCATGTACTATCTGAGGAGGTCCCAGTTTATCGATGTTTTCAACTCGA GCCCTGACGAGACTGCCTTCTTCCGCCTGATGCTGAACCGTGAAGGGGTAGTGAGTTCCCTCGTGATGATACAGCCGACATTGTTCCAGTACTCGTTCGG TGGCCCTCCGATTCCAGTCCTCTTGGATGTTCGTTCCATCTCTGCCGATGTGATTCTGCTCTTTGATTCCTACTTCCAGGTAGTGATCCACTACGGTTCC AACATTGCTCAGTGGAAGAAGCTCGGCTACCACAACGACCCCAACCATGAGAATCTGAGGAAGTTGTTGGAAGCACCTGAGATTGATGCAGAGCAGTTGG TACAAGACAGAATCCCAGTACCGAAACTGATAAAATGTGATCAGCACAGCAGTCAGGCCAGGTTTCTTCTGGCCAAGCTGAACCCATCAGTGACTCAGGA CTCGACATATAAAGAAGGATCAGACGTCATATTCACCGATGATTTCAGCCTGCAAGTATTCATAGATCACTTGCAGACCCTGGCAGTGAAAGGTTAA
AA sequence Show only first row Show all	>Lus10022219 pacid=23139442 polypeptide=Lus10022219 locus=Lus10022219.g ID=Lus10022219.BGIv1.0 annot-version=v1.0 MDFVELEATEGLRWSWNAWPTTKSEAASLVVPLSIMCTPLMQSSELPILPYEPLHCSRCNSVLNPYARVDYQSRIWCCPFCFHRNTFPISYSGIGETNLP AELFPTYSAVEYKIDKKDAKISASSQLGYRWSPQGLPSSNGSLSSMASIGSPRVGMGGGGGGGGGGGDFRKVGPAFVFVVDACTEDEELSAIKSELLLVV EQLPENALVGLVAFDSMVRVTDLGFSDCSRAIVFHGERELSSQQTQQFLGLHIRKQQQQHGGTQFIQKQGFLLPVSECDFNITTAIEELRSLSVVKTGHR PQRCTGAAIAVAVGLLEGCCVNTGSRIMVFTSGPATLGPGVVVDSDLSSMIRTHQDLINGRAPYYTNSCSFYNNLSTRLSDASIVLDLFACSLDQVGVAE LKVPVEQSGGFLLLGELFDSHQFRKCLRHIFSRDDDRNLKMHFDATIEVVTTKDVKICGALGPCISLGKKNDLVSEHEIGEGGTYLWNLGTLTNRTCIAF FFEVGNEQKAHPGSAFLIQFITRFRRGNLGVYKRVTTAARRWVTVSKAADISAGFDQEAAAAVMGRLAIHRAEKCHARDVIRWLDDNLITFASKFGDYIE EDPSSFRLSSSFSLYPQFMYYLRRSQFIDVFNSSPDETAFFRLMLNREGVVSSLVMIQPTLFQYSFGGPPIPVLLDVRSISADVILLFDSYFQVVIHYGS NIAQWKKLGYHNDPNHENLRKLLEAPEIDAEQLVQDRIPVPKLIKCDQHSSQARFLLAKLNPSVTQDSTYKEGSDVIFTDDFSLQVFIDHLQTLAVKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43670			Sec23/Sec24 protein transport ...		Lus10022219 [exp]	0	1
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Lus10013506 [exp]	5.0	0.9009
AT3G13980			unknown protein		Lus10037659 [exp]	5.4	0.8430
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10026627 [exp]	5.5	0.8961
AT2G41900	C3HZnF	OXS2	OXIDATIVE STRESS 2, CCCH-type ...		Lus10019709 [exp]	5.7	0.8598
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Lus10006364 [exp]	5.9	0.8781
AT1G21370			unknown protein		Lus10029764 [exp]	7.5	0.8935
AT1G43690			ubiquitin interaction motif-co...		Lus10024546 [exp]	9.8	0.8789
AT3G26370			O-fucosyltransferase family pr...		Lus10006227 [exp]	10.4	0.8848
					Lus10011573 [exp]	11.8	0.8434
AT5G35160			Endomembrane protein 70 protei...		Lus10005060 [exp]	14.4	0.8759

Compare expression of checked genes

Lus10022219 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.