Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16890 442 / 2e-152 UDP-Glycosyltransferase superfamily protein (.1.2) AT5G14860 423 / 5e-145 UDP-Glycosyltransferase superfamily protein (.1) AT1G10400 383 / 1e-129 UDP-Glycosyltransferase superfamily protein (.1) AT2G15490 219 / 9e-66 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3) AT3G53160 216 / 8e-65 UGT73C7 UDP-glucosyl transferase 73C7 (.1) AT2G15480 216 / 2e-64 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT2G36750 214 / 5e-64 UGT73C1, UGT72C1 UDP-glucosyl transferase 73C1 (.1) AT2G36800 211 / 8e-63 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) AT2G36780 210 / 3e-62 UDP-Glycosyltransferase superfamily protein (.1) AT4G34138 206 / 1e-60 UGT73B1 UDP-glucosyl transferase 73B1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022222 [exp] 452 / 1e-156 AT5G14860 505 / 4e-177 UDP-Glycosyltransferase superfamily protein (.1) Lus10022221 [exp] 440 / 2e-151 AT2G16890 479 / 1e-166 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10020124 [exp] 263 / 1e-82 AT2G15490 301 / 4e-97 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10026927 [exp] 261 / 9e-82 AT2G15480 310 / 2e-100 UDP-glucosyl transferase 73B5 (.1.2) Lus10026926 [exp] 248 / 1e-76 AT2G15480 300 / 1e-96 UDP-glucosyl transferase 73B5 (.1.2) Lus10019832 [exp] 231 / 4e-70 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10014086 [exp] 228 / 3e-69 AT2G15490 496 / 4e-173 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10014082 [exp] 225 / 3e-68 AT2G15480 483 / 3e-168 UDP-glucosyl transferase 73B5 (.1.2) Lus10014079 [exp] 222 / 8e-67 AT4G34131 483 / 3e-168 UDP-glucosyl transferase 73B3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G348100 [exp] 515 / 0 AT2G16890 521 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.006G272600 [exp] 281 / 1e-89 AT2G15490 300 / 1e-96 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.006G272500 [exp] 276 / 6e-88 AT2G15490 318 / 1e-103 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.018G008900 [exp] 276 / 7e-88 AT2G15490 312 / 1e-101 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.018G009000 [exp] 276 / 8e-88 AT2G15490 323 / 6e-106 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.005G036100 [exp] 251 / 4e-78 AT2G15490 309 / 3e-100 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.009G099032 [exp] 248 / 7e-77 AT2G15490 558 / 0.0 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G303600 [exp] 246 / 4e-76 AT4G34131 568 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303000 [exp] 244 / 3e-75 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303700 [exp] 239 / 1e-73 AT2G15480 558 / 0.0 UDP-glucosyl transferase 73B5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10022220 pacid=23139505 polypeptide=Lus10022220 locus=Lus10022220.g ID=Lus10022220.BGIv1.0 annot-version=v1.0 ATGGGAGATTCACGCCAACATCATGTACTGATATTCCCATTCATGTCAAAAGGCCATACCATCCCAATCCTTCACCTAGTTCATCTCCTTCTTCGTCGTC AGGTCGCCGTCACCGTTATCACCACCCCTGCTAACCGCCCTTTCATTGCTCAATCTCTCCAAGACACATCTGCATCCATTCTCCAAATCCCATTCCCTGC AAATTTGGAAGGCATCCCTCCCGGTGTTGAGAGCACAGACAACCTCCCATCCATGTCCCTCTTCGCTCGATTCGCCTTAGCCACACAGCTAATGCAGCCA GATTTCGAACGATCCCTCGAGAGTCTTCCCCCGATCGACTTCATCGTATCAGATGGCTTCCTATGGTGGACATTGGAGTCTTCAATCAAGTACGGATTTC CAAGGTTAGTGTTCAATGGTATGTGTAACTACTCCATCTGTGTATTTAGAAGTGTAGTCCAGAGTGGGATTCTCTTCGGGAACGAGTTGGATGATGAATT GATCCCGGTCCCGAAGTTTCCATGGATTAAAGTGACCAAGAATGACTTCGAAAGCCATGTCAAGAACCCCGTTGGAATCAATGGTCCTGACTATGAGTTT GTGATGAAGTCAATGACTGCATCCAAAAGCAGTTACGGTTACGTTGTGAATAGCTTCTATGAGCTTGAACCAGTTTTTGTGGATTCCTTTAACAACTTTG TAAGCGGTGGACCTAAGGCTTGGTGCGTTGGACCACTTTGCCTAGCAAAGGCTCATGAAAAGATTGAACATCAGAAACCCAGTTGGATTCAGTGGCTGGA TGAAAAAACAGAGCAGAAAAGCTCGGTACTTTTCGTTGCTTTTGGTTCACAAGCCAAAGTCTTGCCAGACCAACTAAGGGAGATTTCAGCTGGACTTGAG AAATCAAATGTAAACTTCCTGTGGGTTACGAAAGAGAAAGAATCCGAGTTAGGGGACGGGTTTGAAGAGAGGGTTAGAGGCAGAGGGATTGTGGTACGAG AGTGGGTAGACCAGATGGAGATACTAAAGCATCCTAGCGTGCAAGGATTCGTGAGCCACTGCGGATGGAATTCAGTCCTGGAAGCCATAAGTGCAGGGGT CCCGATCCTGGCGTGGCCAATGATGGCAGAACAACATCTGAATGCGAGAATGGTGGTGGAGGAATTGGAAGTGGGGATAAGAGTGGAGACGAGTAATGGG TCGGTAAGAGGGTTTGTGAAATGGGAAGGGTTGGAGAAGACGGCGAGGGAGCTTATGGAGGGAGAAAAGGGGGAAGAGGCGAAGAAGAAAGTGATGGAGT ACTCTACAAAAGCAATGCAGGCCATGGGGGAAAAGACAGGTTCATCCTGGCGCACGCTGGACATGCTTATCGAAGAATTATGCCGCAAAAGAACCTAA
AA sequence Show only first row Show all	>Lus10022220 pacid=23139505 polypeptide=Lus10022220 locus=Lus10022220.g ID=Lus10022220.BGIv1.0 annot-version=v1.0 MGDSRQHHVLIFPFMSKGHTIPILHLVHLLLRRQVAVTVITTPANRPFIAQSLQDTSASILQIPFPANLEGIPPGVESTDNLPSMSLFARFALATQLMQP DFERSLESLPPIDFIVSDGFLWWTLESSIKYGFPRLVFNGMCNYSICVFRSVVQSGILFGNELDDELIPVPKFPWIKVTKNDFESHVKNPVGINGPDYEF VMKSMTASKSSYGYVVNSFYELEPVFVDSFNNFVSGGPKAWCVGPLCLAKAHEKIEHQKPSWIQWLDEKTEQKSSVLFVAFGSQAKVLPDQLREISAGLE KSNVNFLWVTKEKESELGDGFEERVRGRGIVVREWVDQMEILKHPSVQGFVSHCGWNSVLEAISAGVPILAWPMMAEQHLNARMVVEELEVGIRVETSNG SVRGFVKWEGLEKTARELMEGEKGEEAKKKVMEYSTKAMQAMGEKTGSSWRTLDMLIEELCRKRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16890			UDP-Glycosyltransferase superf...		Lus10022220 [exp]	0	1
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Lus10009119 [exp]	2.0	0.7689
AT5G49100			unknown protein		Lus10006504 [exp]	2.2	0.7874
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10012008 [exp]	6.3	0.7603
AT5G09650		ATPPA6	pyrophosphorylase 6 (.1)		Lus10035653 [exp]	8.7	0.7206
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Lus10039241 [exp]	10.2	0.7675
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Lus10018062 [exp]	10.8	0.7439
AT5G62960			unknown protein		Lus10014556 [exp]	11.0	0.7542
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10029283 [exp]	13.1	0.7098
AT1G32900		GBSS1	granule bound starch synthase ...		Lus10008279 [exp]	14.1	0.7403
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10022163 [exp]	15.0	0.7556

Compare expression of checked genes

Lus10022220 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.