Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16890 459 / 6e-159 UDP-Glycosyltransferase superfamily protein (.1.2) AT5G14860 451 / 1e-155 UDP-Glycosyltransferase superfamily protein (.1) AT1G10400 403 / 6e-137 UDP-Glycosyltransferase superfamily protein (.1) AT2G15490 266 / 2e-83 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3) AT2G15480 252 / 4e-78 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT2G36800 226 / 4e-68 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) AT4G34131 224 / 2e-67 UGT73B3 UDP-glucosyl transferase 73B3 (.1) AT4G34138 224 / 2e-67 UGT73B1 UDP-glucosyl transferase 73B1 (.1) AT2G36780 223 / 6e-67 UDP-Glycosyltransferase superfamily protein (.1) AT2G36750 222 / 2e-66 UGT73C1, UGT72C1 UDP-glucosyl transferase 73C1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022220 [exp] 473 / 3e-164 AT2G16890 497 / 4e-174 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10022222 [exp] 447 / 3e-154 AT5G14860 505 / 4e-177 UDP-Glycosyltransferase superfamily protein (.1) Lus10026927 [exp] 290 / 2e-92 AT2G15480 310 / 2e-100 UDP-glucosyl transferase 73B5 (.1.2) Lus10026926 [exp] 284 / 2e-90 AT2G15480 300 / 1e-96 UDP-glucosyl transferase 73B5 (.1.2) Lus10020124 [exp] 283 / 4e-90 AT2G15490 301 / 4e-97 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10014079 [exp] 256 / 1e-79 AT4G34131 483 / 3e-168 UDP-glucosyl transferase 73B3 (.1) Lus10014086 [exp] 236 / 5e-72 AT2G15490 496 / 4e-173 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10014082 [exp] 234 / 2e-71 AT2G15480 483 / 3e-168 UDP-glucosyl transferase 73B5 (.1.2) Lus10003323 [exp] 235 / 3e-71 AT2G36800 493 / 2e-171 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G348100 [exp] 493 / 3e-172 AT2G16890 521 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.006G272600 [exp] 296 / 3e-95 AT2G15490 300 / 1e-96 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.018G008900 [exp] 291 / 4e-93 AT2G15490 312 / 1e-101 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.006G272500 [exp] 289 / 2e-92 AT2G15490 318 / 1e-103 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.018G009000 [exp] 276 / 1e-87 AT2G15490 323 / 6e-106 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.005G036100 [exp] 263 / 4e-82 AT2G15490 309 / 3e-100 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G303000 [exp] 261 / 1e-81 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303700 [exp] 259 / 6e-81 AT2G15480 558 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G303300 [exp] 257 / 6e-80 AT2G15480 555 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G303600 [exp] 255 / 4e-79 AT4G34131 568 / 0.0 UDP-glucosyl transferase 73B3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10022221 pacid=23139412 polypeptide=Lus10022221 locus=Lus10022221.g ID=Lus10022221.BGIv1.0 annot-version=v1.0 ATGGATTCCGTAGCAGCTGCAGACATATCTACTGCTACTACTACTACACTCCATCAAAATGGAAACGGCGGCGCCACTCATATTCACGCCGTCCTTTTCC CCTTCATGTCCAAAGGCCACACAATCCCCCTCCTCCACCTCGCACGTCTCCTCCTCCGCCGTCAAATCTCCGTCACCATCTTCACCACTCCTGCCAACCG CCCTTTCATCTCCTCCGCACTCCCCGACGATTCAGCTTCCATCCTCGAATTGCCTTTCCCTCACGAAATCCCCGGAATACCCGCCGGAGTCGAGAGCACC GACAAGCTCCCTTCCATGTCCCTCTTCCCTCAATTCGCCCTCTCCACCGAAAAATATCTCCGCCCGCAATTCGACTCCGCCTTACAGAACCTAAATCCCC GCCCCACTTTCATGGTCTCCGACGGATTCCTCTGGTGGACACAGGACACCGCCGAAAAATTCGGAATCCCACGCCTCACCTTCTACGGCATGTCCAACCA CGCCGCCAGCGTCTCTAGAGCCGTCGCCATCGACCGCCTCCTCCTCGGCCCCGAGTCGGAGGACGAATTAATCACCGTAACTCAATTGCCCTGGATGAAG GTCTGCAAAAACGATTTCCATGAAGATTCCAGATCCCCTGAGCCCAAAGGCGTCAACGCTGAATTCATCTGGAAATCCGTAATGGCCTCCTCTAGAAGTT TCGGGTATGTAATGAACAGCTTCTACGAGCTGGAATCTGTCTTCGTTGACTATTTGAACGGCCTCGGCAGTCAGAAACATCACTGCGTGGGGCCCCTCTG CCTGGCTGACGATGAAAACGACGCCGTTGGCAACAACAAGGATGAAAATCCGTGGATGTCGTGGTTGGACAAAAAGCTAGAGGAGGGGAAATCCGTGCTG TACGTGGCGTTCGGTTCACAAGCGGAGATCTCGAGGGAGCAATTGGAGGAGATAGCGCGTGGGCTGGAAGATTCGGAGGCGAATTACTTGTGGGTGATTC GGAAGGATGCGGAAGTGGTGAGAGGAGTAGGTAATAATAAGGATCATCGTCGTCGGGGGATGGTGATTGGGGATTGGGTGAACCAGATGGAGATATTGGG GCATAAGAGCGTCAAGGGGTTCATGAGTCACTGCGGGTGGAATTCGGTGATGGAGAGCGTCTGCGCGGGGGTTCCGATGGTGGCGTGGCCGATGATGGCG GAGCAGCCGTTGAACGCGAGGATGGTGGCGGAGGAGATTAAGGTCGGGATTAGGGTGGAAGGTTCGGGGAGGAATGGGCGGCTTGTGAAGAAGGGAGCGG TGGAGGAGGCGGTGAGGGAGTTGATGGCCGGAGAGAAAGGGAAGGAAGTTCGGAAGAATGTTGAGGCGTTTGCTGAGAAGGCGATCAAGAGTATGGAGAA AGGGAGTGGTTCGTCGTGGCGAACTTTGGATGGGCTTGTTCGTGAGTTGTGGAGTTACAAAGCCATTGCTGAAAAATAA
AA sequence Show only first row Show all	>Lus10022221 pacid=23139412 polypeptide=Lus10022221 locus=Lus10022221.g ID=Lus10022221.BGIv1.0 annot-version=v1.0 MDSVAAADISTATTTTLHQNGNGGATHIHAVLFPFMSKGHTIPLLHLARLLLRRQISVTIFTTPANRPFISSALPDDSASILELPFPHEIPGIPAGVEST DKLPSMSLFPQFALSTEKYLRPQFDSALQNLNPRPTFMVSDGFLWWTQDTAEKFGIPRLTFYGMSNHAASVSRAVAIDRLLLGPESEDELITVTQLPWMK VCKNDFHEDSRSPEPKGVNAEFIWKSVMASSRSFGYVMNSFYELESVFVDYLNGLGSQKHHCVGPLCLADDENDAVGNNKDENPWMSWLDKKLEEGKSVL YVAFGSQAEISREQLEEIARGLEDSEANYLWVIRKDAEVVRGVGNNKDHRRRGMVIGDWVNQMEILGHKSVKGFMSHCGWNSVMESVCAGVPMVAWPMMA EQPLNARMVAEEIKVGIRVEGSGRNGRLVKKGAVEEAVRELMAGEKGKEVRKNVEAFAEKAIKSMEKGSGSSWRTLDGLVRELWSYKAIAEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16890			UDP-Glycosyltransferase superf...		Lus10022221 [exp]	0	1
AT2G37730			Protein of unknown function (D...		Lus10024364 [exp]	1.0	0.8536
AT1G11770			FAD-binding Berberine family p...		Lus10038440 [exp]	9.5	0.8117
AT1G67330			Protein of unknown function (D...		Lus10037026 [exp]	10.7	0.8534
AT1G61800		ATGPT2, GPT2	ARABIDOPSIS GLUCOSE-6-PHOSPHAT...		Lus10007653 [exp]	15.3	0.8187
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10002741 [exp]	15.9	0.7588
AT2G47650		UXS4	UDP-xylose synthase 4 (.1.2)		Lus10003605 [exp]	16.0	0.7801
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Lus10020411 [exp]	17.7	0.7551
AT5G25110		CIPK25, SnRK3.2...	SNF1-RELATED PROTEIN KINASE 3....		Lus10007448 [exp]	24.2	0.7564
AT4G16380			Heavy metal transport/detoxifi...		Lus10039073 [exp]	24.7	0.7949
AT3G48700		ATCXE13	carboxyesterase 13 (.1)		Lus10012073 [exp]	25.8	0.8120

Compare expression of checked genes

Lus10022221 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.