Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16890 505 / 4e-177 UDP-Glycosyltransferase superfamily protein (.1.2) AT5G14860 505 / 6e-177 UDP-Glycosyltransferase superfamily protein (.1) AT1G10400 434 / 4e-149 UDP-Glycosyltransferase superfamily protein (.1) AT2G15490 263 / 3e-82 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3) AT2G36800 256 / 8e-80 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) AT2G15480 256 / 1e-79 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT2G36780 255 / 4e-79 UDP-Glycosyltransferase superfamily protein (.1) AT4G34131 251 / 4e-78 UGT73B3 UDP-glucosyl transferase 73B3 (.1) AT2G36750 249 / 4e-77 UGT73C1, UGT72C1 UDP-glucosyl transferase 73C1 (.1) AT2G36770 248 / 2e-76 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022220 [exp] 500 / 3e-175 AT2G16890 497 / 4e-174 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10022221 [exp] 448 / 2e-154 AT2G16890 479 / 1e-166 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10026926 [exp] 322 / 2e-105 AT2G15480 300 / 1e-96 UDP-glucosyl transferase 73B5 (.1.2) Lus10026927 [exp] 317 / 3e-103 AT2G15480 310 / 2e-100 UDP-glucosyl transferase 73B5 (.1.2) Lus10020124 [exp] 315 / 2e-102 AT2G15490 301 / 4e-97 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10014079 [exp] 271 / 2e-85 AT4G34131 483 / 3e-168 UDP-glucosyl transferase 73B3 (.1) Lus10019832 [exp] 270 / 7e-85 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10014082 [exp] 261 / 5e-82 AT2G15480 483 / 3e-168 UDP-glucosyl transferase 73B5 (.1.2) Lus10014083 [exp] 260 / 5e-81 AT4G34131 489 / 2e-170 UDP-glucosyl transferase 73B3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G348100 [exp] 530 / 0 AT2G16890 521 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.018G008900 [exp] 314 / 2e-102 AT2G15490 312 / 1e-101 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.006G272600 [exp] 307 / 1e-99 AT2G15490 300 / 1e-96 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.018G009000 [exp] 305 / 7e-99 AT2G15490 323 / 6e-106 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.006G272500 [exp] 303 / 4e-98 AT2G15490 318 / 1e-103 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.009G099032 [exp] 300 / 6e-97 AT2G15490 558 / 0.0 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.005G036100 [exp] 301 / 7e-97 AT2G15490 309 / 3e-100 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.009G098966 [exp] 279 / 1e-88 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G302400 [exp] 273 / 2e-86 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G303000 [exp] 272 / 8e-86 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10022222 pacid=23139396 polypeptide=Lus10022222 locus=Lus10022222.g ID=Lus10022222.BGIv1.0 annot-version=v1.0 ATGGAAAACACCAACCGCCACGCCGTTATATTCCCATTCATGGCGAAAGGCCACGTCATCCCCCTCCTCCACTTCGCTCGCCTCCTCCTCCGCCGCCAAA TCCACGTCACCGTAGTCACCACCCCGGCCAACCGCTCCTTCGTTGCCGAATTCCTCGGCGGTCATAATAACTCTTCCGCCGCCGTAGTCACCATCCCTTT CCCGCAGGGAATCCACCGGGATATCCCGCCGGGAGTGGAGAGCACCGACAAACTCCCTTCCATGTCCCTCTTCCCCACCTTTGCCATCTCCACCAAGCTC ATGCAGCCTCACTTCGAGCTCGCCCTTGCTTCCCTCCGACCGGTCGACTTCTTAGTCTCGGATGGTTTTCTAGGGTGGACCCTTGATTCCGCCAACAAGT TCGGGATTCCCAGGTTGGTTTTCTACGGAATCAGCTGCTACGCTTCTTGTGTATGTAAGAGTGTCGGAGAAGGTAAGCTCCTTGCCCGCGCTCTCTCCGA CCACGACCCCGTCACTTTGCCGGAGTTTCCTTGGATTCAGGTGACGAAGCAAGACTTTGAGCCGCCATTTGACGATCCCGAAGCAAAAGGCGCATACTTC GATTTCCATCTCTCGTGTTTCATTTCCACAGCAAATAGTTTCGGGTTGATCATCAACGGTTTCTACGAGTTGGAACCACTGTTCGTAGATCACTTAAACC GTCACGCATTGCCTAAGGCGTGGTGCGTGGGCCCATTTTTCCTGGCCCAGCCCAACAAAAAAGGAGATGAAACTGATCATTATCTGGTCAAACCATACAC GAAACCCACATGGATCGAGTGGTTGGACCGAAACTTGAGGGAAGGGATCCCTGTCTTGTATGTGGCATTCGGGTCTCAGTCAGAGATATCGTCGAGCCAG TTGAAGGAGATAGCGCAAGGTCTACATGACTCGGGCGTGAAGTTCCTATGGGTGACTAGGAGCCACCACGAGCCAGAAGCAGTACTCGGAGGAGAATTCG AGGCTAGAGTGAAGGACCAAGGGATGATTGTTCGAGAATGGGTGGACCAGAGGGAAATACTGGTCCACCCGAGTGTTCAGGGTTTCCTGAGTCACTGCGG CTGGAACTCGATGATGGAGGCAATGTCTGCAGGAGTGCCGATCCTGGCATGGCCGATGCTGGCGGAGCAGCCGCTGAATGCGCGAATGGTGTCGGAGGAG ATAAAAGTGGGAATTCGGGTGGAGAGTTGTGACGGGTCGGTCAAAGGGTTTGTCCGGTCAGAAGGGTTGAGTAAGATGGTTAAGGAGCTGATGGAAGGAG AGAAAGGGAAAGAAGTGAGGAAGAGGGCAAAAGAGTACGGGGAGATGGCTAGGAAGGCTATGGAAGAAGGGAGCGGGTCGTCGTGGAGGAATTTGGATTT GTTGCTTGGTGAGATATTTACTGCAAAAATATGA
AA sequence Show only first row Show all	>Lus10022222 pacid=23139396 polypeptide=Lus10022222 locus=Lus10022222.g ID=Lus10022222.BGIv1.0 annot-version=v1.0 MENTNRHAVIFPFMAKGHVIPLLHFARLLLRRQIHVTVVTTPANRSFVAEFLGGHNNSSAAVVTIPFPQGIHRDIPPGVESTDKLPSMSLFPTFAISTKL MQPHFELALASLRPVDFLVSDGFLGWTLDSANKFGIPRLVFYGISCYASCVCKSVGEGKLLARALSDHDPVTLPEFPWIQVTKQDFEPPFDDPEAKGAYF DFHLSCFISTANSFGLIINGFYELEPLFVDHLNRHALPKAWCVGPFFLAQPNKKGDETDHYLVKPYTKPTWIEWLDRNLREGIPVLYVAFGSQSEISSSQ LKEIAQGLHDSGVKFLWVTRSHHEPEAVLGGEFEARVKDQGMIVREWVDQREILVHPSVQGFLSHCGWNSMMEAMSAGVPILAWPMLAEQPLNARMVSEE IKVGIRVESCDGSVKGFVRSEGLSKMVKELMEGEKGKEVRKRAKEYGEMARKAMEEGSGSSWRNLDLLLGEIFTAKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14860			UDP-Glycosyltransferase superf...		Lus10022222 [exp]	0	1
AT3G18430			Calcium-binding EF-hand family...		Lus10042708 [exp]	2.0	0.9460
AT1G34060			Pyridoxal phosphate (PLP)-depe...		Lus10028695 [exp]	2.8	0.9344
AT5G10770			Eukaryotic aspartyl protease f...		Lus10020100 [exp]	5.0	0.9147
AT1G79510			Uncharacterized conserved prot...		Lus10001766 [exp]	6.0	0.9289
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10011288 [exp]	6.5	0.9036
AT1G22430			GroES-like zinc-binding dehydr...		Lus10004786 [exp]	7.2	0.9191
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10042875 [exp]	7.7	0.8780
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Lus10000231 [exp]	11.5	0.8840
AT1G79510			Uncharacterized conserved prot...		Lus10009597 [exp]	13.2	0.9026
AT3G57680			Peptidase S41 family protein (...		Lus10040494 [exp]	13.4	0.8662

Compare expression of checked genes

Lus10022222 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.