Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18670 72 / 1e-15 RING/U-box superfamily protein (.1) AT1G23980 72 / 1e-14 RING/U-box superfamily protein (.1) AT4G30370 70 / 1e-14 RING/U-box superfamily protein (.1) AT2G18650 72 / 2e-14 MEE16 maternal effect embryo arrest 16, RING/U-box superfamily protein (.1) AT4G30400 70 / 9e-14 RING/U-box superfamily protein (.1) AT5G57750 68 / 1e-13 RING/U-box superfamily protein (.1) AT1G74410 68 / 2e-13 RING/U-box superfamily protein (.1) AT3G48030 68 / 4e-13 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1) AT2G20030 67 / 1e-12 RING/U-box superfamily protein (.1) AT5G05810 67 / 1e-12 ATL43 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008797 [exp] 344 / 5e-121 AT5G40250 77 / 2e-16 RING/U-box superfamily protein (.1) Lus10029178 [exp] 74 / 3e-15 AT5G40250 297 / 1e-98 RING/U-box superfamily protein (.1) Lus10012987 [exp] 74 / 4e-15 AT5G40250 302 / 7e-101 RING/U-box superfamily protein (.1) Lus10006493 [exp] 72 / 1e-14 AT3G16720 221 / 5e-71 TOXICOS EN LEVADURA 2 (.1) Lus10012975 [exp] 72 / 2e-14 AT2G20030 291 / 2e-95 RING/U-box superfamily protein (.1) Lus10037490 [exp] 71 / 4e-14 AT3G16720 224 / 2e-70 TOXICOS EN LEVADURA 2 (.1) Lus10019973 [exp] 71 / 4e-14 AT4G30400 252 / 4e-80 RING/U-box superfamily protein (.1) Lus10015506 [exp] 67 / 5e-14 AT2G18670 102 / 2e-28 RING/U-box superfamily protein (.1) Lus10015502 [exp] 71 / 7e-14 AT4G30400 251 / 1e-79 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G072300 [exp] 74 / 3e-15 AT5G40250 372 / 7e-128 RING/U-box superfamily protein (.1) Potri.006G175700 [exp] 71 / 7e-15 AT2G18670 91 / 1e-22 RING/U-box superfamily protein (.1) Potri.001G351466 [exp] 73 / 1e-14 AT5G40250 355 / 2e-121 RING/U-box superfamily protein (.1) Potri.015G073600 [exp] 72 / 1e-14 AT5G40250 259 / 1e-83 RING/U-box superfamily protein (.1) Potri.018G085001 [exp] 72 / 2e-14 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1) Potri.012G078200 [exp] 71 / 3e-14 AT5G40250 241 / 1e-76 RING/U-box superfamily protein (.1) Potri.018G098100 [exp] 69 / 4e-14 AT2G18670 91 / 2e-23 RING/U-box superfamily protein (.1) Potri.007G061400 [exp] 68 / 1e-13 AT2G17730 351 / 8e-124 NEP-interacting protein 2 (.1.2) Potri.018G098500 [exp] 69 / 2e-13 AT4G30400 339 / 7e-112 RING/U-box superfamily protein (.1) Potri.006G176700 [exp] 69 / 2e-13 AT4G30400 304 / 3e-98 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10022223 pacid=23139485 polypeptide=Lus10022223 locus=Lus10022223.g ID=Lus10022223.BGIv1.0 annot-version=v1.0 ATGGTAGCTTCAGATGTTGCAATCATGGGTATACTAGTCTCAATGCTCTTACTATTCATGATTGTGGTAGGGGTAGTGATCATCCACGTTTGCGTCACTG CTCGATCGGCCGGGAGAGGAATCGAAGACGAGGATACCAATCTTCGAACCGAAAGGAGCAGTAGCCGGAGGGTGATGAGGAGGTTGTCTCAAGCAGACTT GGACAAGCTCCCTTGCTATGAATATCAGTCATCCAAGGACAACGACAGCATCATCGTCAGGGAAGGGATAGTAATTACTGGTGAATTCGAGGAGGCAGAT TGCGCGGTGTGCCTGGAAAGCTTCAAGACAGGGGAGAAATGCAGGGTGCTGCCGGCTTGTAAGCACTCTTTTCATGCTGAGTGTGTGGATGGGTGGCTCC TTAAGATACCCGTTTGTCCAATCTGCAGAGGCAAAATTAATTCGGATTTTTCATCTTCGTCGTCGAGGACGATGAGTGCTAACTTCAGTGATGAGTCGAG GAGCTTGGAGATGAGAGAAAGGAGCTTTGCCAGCACAAGTCAGGGGAGCAGCCGTTTTAGTGATGCGAGTTTTAATCAAGTGGGTACTGGGAGGATGTTC ATAATGGGAAGTGAGAATGTAATAATAGAGATGGTGGATAGCCCAGATAGAGATGTTGATGATGCCATGAGTGATTCCATTTCTGGACCTCCTGCTTCTC TTGATTCATTGCCATTGTAG
AA sequence Show only first row Show all	>Lus10022223 pacid=23139485 polypeptide=Lus10022223 locus=Lus10022223.g ID=Lus10022223.BGIv1.0 annot-version=v1.0 MVASDVAIMGILVSMLLLFMIVVGVVIIHVCVTARSAGRGIEDEDTNLRTERSSSRRVMRRLSQADLDKLPCYEYQSSKDNDSIIVREGIVITGEFEEAD CAVCLESFKTGEKCRVLPACKHSFHAECVDGWLLKIPVCPICRGKINSDFSSSSSRTMSANFSDESRSLEMRERSFASTSQGSSRFSDASFNQVGTGRMF IMGSENVIIEMVDSPDRDVDDAMSDSISGPPASLDSLPL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23980			RING/U-box superfamily protein...		Lus10022223 [exp]	0	1
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10035001 [exp]	4.9	0.6752
					Lus10021990 [exp]	5.4	0.7408
AT1G27000			Protein of unknown function (D...		Lus10013269 [exp]	5.5	0.5966
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041682 [exp]	7.5	0.7393
					Lus10004507 [exp]	11.1	0.6809
AT5G45550		MOB1-like	MOB1-like, Mob1/phocein family...		Lus10007595 [exp]	13.6	0.6380
AT5G16100			unknown protein		Lus10004035 [exp]	17.0	0.5931
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10024903 [exp]	17.0	0.6375
AT2G46150			Late embryogenesis abundant (L...		Lus10039664 [exp]	25.4	0.6001
					Lus10026021 [exp]	28.2	0.5879

Compare expression of checked genes

Lus10022223 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.