Lus10022224 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G01460 859 / 0 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008796 2192 / 0 AT3G01460 1574 / 0.0 methyl-CPG-binding domain 9 (.1)
Lus10030625 280 / 1e-75 AT3G01460 706 / 0.0 methyl-CPG-binding domain 9 (.1)
Lus10030864 245 / 5e-65 AT3G01460 511 / 2e-152 methyl-CPG-binding domain 9 (.1)
Lus10030865 74 / 1e-13 AT3G01460 75 / 6e-15 methyl-CPG-binding domain 9 (.1)
Lus10030624 50 / 1e-05 AT3G01460 59 / 2e-09 methyl-CPG-binding domain 9 (.1)
Lus10025454 49 / 9e-05 AT1G28420 1275 / 0.0 homeobox-1 (.1)
Lus10020162 45 / 0.0006 AT2G19260 156 / 1e-41 RING/FYVE/PHD zinc finger superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G072580 821 / 0 AT3G01460 705 / 0.0 methyl-CPG-binding domain 9 (.1)
Potri.017G072460 632 / 0 AT3G01460 929 / 0.0 methyl-CPG-binding domain 9 (.1)
Potri.012G018300 47 / 7e-05 AT5G24330 480 / 3e-171 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1)
Potri.015G009632 47 / 0.0001 AT5G24330 483 / 1e-172 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0390 zf-FYVE-PHD PF00628 PHD PHD-finger
CL0081 MBD-like PF01429 MBD Methyl-CpG binding domain
CL0081 PF00439 Bromodomain Bromodomain
CL0081 PF05964 FYRN F/Y-rich N-terminus
Representative CDS sequence
>Lus10022224 pacid=23139392 polypeptide=Lus10022224 locus=Lus10022224.g ID=Lus10022224.BGIv1.0 annot-version=v1.0
ATGGGACTCTACGATTCAACCGACGTGGCCGGCGACGCTGTAGCCGCCGTCGCCGCCTCCACTCCCCGCTCTCCGCTTCCGATTGATCTCAATGAGATCC
CTTCTTCATCTTCTTCTCCCTCGCTCCCGCACCTCCCCGAACCGGACCAAGCCGACCCCTCCGACGATTATCTAGCTCCCATCGACATCGTTCGCTCTTT
CCATGACCATCCCGACCCGCCTCCTGGTGTTGCTGCTGGCTTGCCCAGGGATGGAGCCTGCGAGGCTTGTGGCGGCTCCGAGTTGCAGGGTCGCGCCGTC
GTCTGCGATGGTTGCGAGCGGGGCTTCCACTTGGCGTGCGTTGAAAAGCGCGGGGGCAGGGGATGTGATGCTGCCGCTGGTTCGTCAGAATGGCTCTGCG
CCGAGTGCGTCGGCGGTGGTTTGAAGAGTAAGCGGTGGCCCTTGGGTTTTAAGAGCAGTAAGAGGATGATTTTGGACATTAATGCCTCGCCTCCCAGTGA
TGTGGACGGGGATGTGGAGGGCGATGAAGAAGCTCATTTGAGGAAGGGCACTCTTGGTGATAATTCTTCTGATGGAAATGCCTTTGGTGCCCCAGTGACA
TATTCAAATATTTTGTATGCGGGGAGCGGATTCGGTTCGAGGAAAGGTTCAGGAATGGTGATGCATGCACTCAGAATGGGTTTCAGGGACCTATCACATC
ATGATACGGATAGAAGCCTAGAAGAAGTAAACTGGGGATTTCCTTTAGGGAAGTGTAGGAGTGGTGATGATACAACAATCAGATTGCCATCTAGGAAACC
AGATGAGCTTTTTCTGCAGGGTCTTAGAGAATTTGTTGCTGAAAGGCGTGGTGTGCTGGAAGAAGGTTGGCGTGTAGAATTGAGACATTCTACTAGTAGT
TACGAACTCTATGTGGTTTATTGCTCTCCAGATGGGAAGACTTTCGGTTCAATGTCTGAGGTTGCTTGTCATCTCGGATTGTTGTCTGTTAATAATGCAA
TGGATAATGATAGTAGTATTAGCCCTTGCTCAAAGTTTCCTGAAAGGCCACATGCATATAAGAGGAGAAAGTCAAAGAAAAATAGGGAAGATGTGCAAAA
TGGCTATAATAAGCATTTGTTGTCAAATAATGAAATTGCAGTGATACAAGGCAGAAAGTTGGGACAAGTCACAGAACATAAGACGTGTGAAATTGGTGCC
GCCAATGCTGAGCCATCTAGTGATGGATTTCCAGTTCAGTTTGGAGATTTCTTTGTTATGTCGTTGGGAAAAATTGATACAAGACCATCCTATCATGATG
TTGGGCACATTTGGCCAATAGGTTATAGGTCATGTTGGCATGATAAGGTTACTGGATCGATATTTGTATATGAAGTGGAAGATGGCAGTGATTCAGGGCC
TGTCTTTAGGATCAAGCGGTTTTCATGCTCTGTGTTCCCCGTTCCTGATTCATCAACTGTTTTGGTCAGGAAAAACATTGACCAGCTTGCCATACAGAAC
AGTGAAGAGAGTTGTGGTAAGCTGTGCGACGGAGATAATGAAAATGGCGAGATTGTTGAAATGTTTCTTATGGAGCATTCCCCTCCAATAGAAAATGATG
TTTTGAATTGTCTCAACTGTTTGTCCAGTGAATGTTTTGCTGAGACTTCAAAGTGCTTGCAGAATAGTTCGGCCTGTGGCACCTCCTTGGTTCTTTCATC
AGATAAGTATGCTGGAGAATATGTTGGTGAGATATCAGTGGAAGGGAAGTCATCATTGTCTGCTTGGAGAACATTAATTCAGAAATTAATCGATGCTTAT
TCTGAAATATACAAACGTGAAGGTAAGCTTAGACTGTCCTGTAATCATGCTGATGTTGCTGTGGGAGAACCAACATGGGTCCCTCAGGATGGGAACATAG
AAACTGGTTTTGCTGCATTGACCAAGTTCTGCAGTTCCCCAATCTATATTGGCATTCCGTTGGAATACCAGGGAGAAGTCAGCTTATTGGCTGCTTCACT
GCTAAAGTGGCTTGACCAGGATAGGTCTGGACTGGATGCGGATTTTGTTCAAGAGATGCTAGAAGAGCTTCCTGGAGTTGAAGTCTGTTCAAAATACGAC
TCTTTAATACATAGAAGCAAGCATACTGCAGTATTAACTATAGGAAATGGACTATTAACAGCTAAAAGGAAACATGCTGATTTATTAGACGACTTATCTC
ACAGCTCTAAGAAGCAAAGGCTGACTAAAGACAGCGTAATGGATTATCCTCCAGGAAGGCTGTTGTGCCCCAAGCTTCCTTCTTCTGTACTTGTTGGTGA
TCTTTATCAGATATGGGAGTCAATGTGGCGTTTCCACAAGATTTTGGGCTTGAAAGAGCCTCTGAAACTGGAGGAACTTGAAGAGGAAATTATCAGCCCA
TGGTCTGGTGGATTGGCTGGTGGTAATAACTTTAAGAAGGTTCAGGGAAGTCGAGTCCCAGATCTTCTAGGTCTTGATACCCCAAATGGGCAAATCCAAT
CTTCAAGTGATGATCATATGTTAGTAAATGAAGATGATCCACATGCTTTTATACAAGTAGAGACAAAAATTGCACCTGATGCAGCCGACAGTGAACTTAC
CGCCATAAACTCCTGTCGACGCATTGGTGCTGCGTTAACTGCTGGTCACAGTGCTCTTTTAGATGTTTTAATAAGTGAGCTGCAATCCAGAGTTGCTGTA
ATTGTAGATCCGACTTTTGATTCTGGGGACATCAAATCAAAAAAGGGTAGACGCAAAGATTCTGATAGTGCAATTTCTGGGAGAAGAAGTAAAATAACTA
TGCTTCCTATCAATGAACTGACATGGCCAGAATTATCACGGAGATTTGTCTTGGCAGTCTTGTGCATGGATGGTAACCTTGAATCTGCTGAGATTACAGC
TCGTGAAAGTGGTAATAAACTGTTTCGCTGCTTGCTAGGGGATGGTGGGGTGCTTTGTGGTGCACTTACTGGGGTTGCAGGAATGGAAGCAGATGCACTG
TTACTTGCAGAAGCTATGAAGAAACTTTACGGAACTTCAAGTTGTGAAATGGATGTTATTACCATTGAAGACGAAGTTACAGATGCAAGTGGGGCCAGTG
AAAAGAATGAACCACATGATTTGACCATGCCTGAGTGGGCGCAGGTGCTGGAGCCTGTTCGGAAACTGCCCACTAATGTTGGTACCAGAATCAGGAAATG
TGTGAACGATGCTATTGAAAAATGCCCACCAGAATGGGCTACGGAAAGACTGAAATATTCAATCAGTAAAGAAATCTACAAGGGAAATGCGTCAGGGCCA
ACAAAGAAAGCAGTACTAGCAGTGCTCGCCGAAGTACAGAATGAGATGTTGCTACAGAATTCTGAAAAGAAAAATAAGAGGAAAGTTACTGTACAGATAT
CTGACATTGTAATGAAGCAATGTCGGATAATCTTACGTCGGGCTGCTTCTGCTGATGATGGGAAAGTGTTTTGCACCTTGCTTGGTGGAAATCTACTAAA
TTCAAGTGATAATGATGATGAGGGGCTCCTTGGATCTCCAGCGATGGTTTCCCGTCCTCTTGATTTCCGAACTATAGATTTGAGATTAGCTCTGGGAGTT
TATGGGACTTGCCATGCCTCTTTTCTTGAAGATGTGCGAGAGTTGTGGGACAATGTGCGGACTGTCTTTCATGACCAGTCTGATCTGTGTCAATTGGCCG
AGACGCTTTCCCAAAATTTCGAATCTATGTATGAGAAAGAGCCGTCACAGGACAGTCAAGTTTCTGGCAGAAGTCGACGCAAGAAATGCCAGGGTGAGGT
GACCAATCTCCACTTGGACAAACTTGGACACTTATCTGTCGTTTTAGGACGAAAAGACTACTGGGAGTTCACTGTCGATGAGAGAGTCTTCTTGCTCAAG
TTCTTGTGTGATGAATTGCTTGGATCAGCTCTTATTCGTCAACATCTCGATCAGTGTATTGAAACTAATGCTGAGCTGCAACAGAAATTGAGAGCTTTTG
TGATTGAATGGAAAAATATGAAGTCTAAGGAAGAGTTCATGGCTCTTAGAGCTGCAAGAACCAGTTCATTTGTTGAAAAAGTTGTGAAGGATGGGGCTAC
ATCTGTAGTTGTCAATCATGATAGCCATGTGGCACTGCCAACTAGTTTAAGCAATGAGCCTACACATTGTAGTCAGACATTGACAGTAATGTGTGGCCGA
GAAGGCACTGGGGTCAATAGCTGTAGCGACCACCACGTGAAGGACTCTGAAGGCAATCAGTATGGTAAAGACCAAACTGTGGATCTGTCAAATAAAACCA
GCCAAGTTAAACCTCTTCTTACTTCAAGTAATGGTAAGAACAGTACTTGTCAAGAGAATAGTAATTCATCTCAACTTAGCCAGTTAAGTCCTGAAGCTCA
GTTGGTACAGGAGGGTGATGATATGCCTGAAAGTGAATCCAGAAATTCACAAGGACTCTTGCCTACTGCTAATATGGATGAGTCACAACAGTTCGATATT
GAGCTCTGTACTCTCAAGAATGACATTCTTAAGTTGAAGAACTCTATACTGAGCATAGAGTTGGAGCTGTTTAGGCTGTCTATCAGAAGGGATTATTTGG
GTAGTGATTCTAGTGGTCGAATTTACTGGGCTTCAGCTTTTCCCGGAAAGCATTCTGGCGTGATTGTGGATGGAACTTGTTCCCTGGAGAAAAGAGAAAC
GTCAGTATATGGAAAAAACCCATTGCGTTATACTTTAGATAGGAACAAGTTGGGGACTGCCAAAGATCGCTTTCCTTTTGCAGGTCTGACGGATTCTGCA
GGTATAGATTCATACTGGATTATGTATGAAACTGATGCAGAAATTGAGGAACTCATTGGTTGCTTGAAGAACAATGACACTAAAGAAAAAGAATTGAAAG
ATTCTTTAATGCAACTGCTAAAGCTGAGATCTCTTGAGAATCGGAAATCTTGTAATCCAGTTGGGGCTGAGCACCAAACAGCCCCATCATTGGATGCAGA
CAACGAGAAAGTTTCATGTAGTGATGTTGTTACAAAAGCTTCTGTATACTTGGAGAAGAAATATGGTAAGCTTGTTGCGTTAGAGTTCTGTGACCTGTCA
AACAAAACGTGGGAAAAGTTACGAATGACTGATGAAGATAAGACGTACAGGTGTCGGTGTTTAGAGCCAATTTGGCGTTCTAGACTCCATTGTTTCTATT
GCCACAGAAGTTTCAGTGATGTTGCTGGATTCAAGGCCCATGATGATGGCAAGTGCAATCAAACTCAGTTATATAAGCCATCTGACGAGAGTAACTATTC
TATAAGGATGGGGAACAATATGATATCTGAGGCTAATAAGAAAGATTGTTCAAGCCAAAAGGAGGTTGTTGAAACCTATCAAAGCAGGTCTGATGTCAGA
CCTAGGCTGGTTAAATTTCAAACTGAGGTGACAGCAAGCCCCTATAATTTTGAAGATATTAGCACTCGATTCGTTACAAAAGATTCTGTCATGGAGTTGG
TGCAGGAAATAGGTCTGATTGGTTCGAAGGGGGTCCCATCATTTCTTGCATCTCCTTCTCCGTATGTCAGTGATTCCACTGTGATGTTGATTTCTGCAGA
AAATGGAGGTGGTCTTGTCAATGAGTTGAATTTTGATGCGAGCCTGGCTGATCAACCAGTGTCTAACAAAGTTTCAGGAAAATCAGCTGCTGGCGAAATA
AATGAGCTTGCAAGGACGAAGAAGTCTTCTTTGGGATGCCTGGAAAGACGAGATGTCAAGCCCTACTATGATAAACGGAGTCCCGAAATTAGACGTAGGA
ACTTATGTGTAGCTCCCTCTTCTGCAATACGACCATTGATAGGCAAGGCTGCTCCTATTCTAAGGAAATTAAAGATCAATTTGCTTGACATGGAGGCGGT
TCTGCCTGAAGACGCCCTAAGGGCTTCAAAATCGGGGATGGAAAGAAGGTGGGCCTGGCGTTCCTTTGTGAAATCGGCCAAGACAATTTACGAGATGATC
CAAGCGACAATTGTACTGGAGGACATGATTAAAAGAGATTACCTGAGGAACGAGTGGTGGTATTGGTCATCTCTTTCAGCTGCCGCCAAAACTTCTACAG
TCTCTTCCCTGGCACTCCGGATATTCTCCCTTGACTCTGCCATTGTTTACGAGAAATTTTGTTGTGATTCGAATCCCTCAGATAAGCTGGAACCCAGCTG
TATACCAGAAGAGAAAACAGTGCATCTGGATTCAGCTGAAAAAATAAAGGTAGGGAGGAGATCTAATAAGAAAAGGAAGGAACCAGAAGGTTGA
AA sequence
>Lus10022224 pacid=23139392 polypeptide=Lus10022224 locus=Lus10022224.g ID=Lus10022224.BGIv1.0 annot-version=v1.0
MGLYDSTDVAGDAVAAVAASTPRSPLPIDLNEIPSSSSSPSLPHLPEPDQADPSDDYLAPIDIVRSFHDHPDPPPGVAAGLPRDGACEACGGSELQGRAV
VCDGCERGFHLACVEKRGGRGCDAAAGSSEWLCAECVGGGLKSKRWPLGFKSSKRMILDINASPPSDVDGDVEGDEEAHLRKGTLGDNSSDGNAFGAPVT
YSNILYAGSGFGSRKGSGMVMHALRMGFRDLSHHDTDRSLEEVNWGFPLGKCRSGDDTTIRLPSRKPDELFLQGLREFVAERRGVLEEGWRVELRHSTSS
YELYVVYCSPDGKTFGSMSEVACHLGLLSVNNAMDNDSSISPCSKFPERPHAYKRRKSKKNREDVQNGYNKHLLSNNEIAVIQGRKLGQVTEHKTCEIGA
ANAEPSSDGFPVQFGDFFVMSLGKIDTRPSYHDVGHIWPIGYRSCWHDKVTGSIFVYEVEDGSDSGPVFRIKRFSCSVFPVPDSSTVLVRKNIDQLAIQN
SEESCGKLCDGDNENGEIVEMFLMEHSPPIENDVLNCLNCLSSECFAETSKCLQNSSACGTSLVLSSDKYAGEYVGEISVEGKSSLSAWRTLIQKLIDAY
SEIYKREGKLRLSCNHADVAVGEPTWVPQDGNIETGFAALTKFCSSPIYIGIPLEYQGEVSLLAASLLKWLDQDRSGLDADFVQEMLEELPGVEVCSKYD
SLIHRSKHTAVLTIGNGLLTAKRKHADLLDDLSHSSKKQRLTKDSVMDYPPGRLLCPKLPSSVLVGDLYQIWESMWRFHKILGLKEPLKLEELEEEIISP
WSGGLAGGNNFKKVQGSRVPDLLGLDTPNGQIQSSSDDHMLVNEDDPHAFIQVETKIAPDAADSELTAINSCRRIGAALTAGHSALLDVLISELQSRVAV
IVDPTFDSGDIKSKKGRRKDSDSAISGRRSKITMLPINELTWPELSRRFVLAVLCMDGNLESAEITARESGNKLFRCLLGDGGVLCGALTGVAGMEADAL
LLAEAMKKLYGTSSCEMDVITIEDEVTDASGASEKNEPHDLTMPEWAQVLEPVRKLPTNVGTRIRKCVNDAIEKCPPEWATERLKYSISKEIYKGNASGP
TKKAVLAVLAEVQNEMLLQNSEKKNKRKVTVQISDIVMKQCRIILRRAASADDGKVFCTLLGGNLLNSSDNDDEGLLGSPAMVSRPLDFRTIDLRLALGV
YGTCHASFLEDVRELWDNVRTVFHDQSDLCQLAETLSQNFESMYEKEPSQDSQVSGRSRRKKCQGEVTNLHLDKLGHLSVVLGRKDYWEFTVDERVFLLK
FLCDELLGSALIRQHLDQCIETNAELQQKLRAFVIEWKNMKSKEEFMALRAARTSSFVEKVVKDGATSVVVNHDSHVALPTSLSNEPTHCSQTLTVMCGR
EGTGVNSCSDHHVKDSEGNQYGKDQTVDLSNKTSQVKPLLTSSNGKNSTCQENSNSSQLSQLSPEAQLVQEGDDMPESESRNSQGLLPTANMDESQQFDI
ELCTLKNDILKLKNSILSIELELFRLSIRRDYLGSDSSGRIYWASAFPGKHSGVIVDGTCSLEKRETSVYGKNPLRYTLDRNKLGTAKDRFPFAGLTDSA
GIDSYWIMYETDAEIEELIGCLKNNDTKEKELKDSLMQLLKLRSLENRKSCNPVGAEHQTAPSLDADNEKVSCSDVVTKASVYLEKKYGKLVALEFCDLS
NKTWEKLRMTDEDKTYRCRCLEPIWRSRLHCFYCHRSFSDVAGFKAHDDGKCNQTQLYKPSDESNYSIRMGNNMISEANKKDCSSQKEVVETYQSRSDVR
PRLVKFQTEVTASPYNFEDISTRFVTKDSVMELVQEIGLIGSKGVPSFLASPSPYVSDSTVMLISAENGGGLVNELNFDASLADQPVSNKVSGKSAAGEI
NELARTKKSSLGCLERRDVKPYYDKRSPEIRRRNLCVAPSSAIRPLIGKAAPILRKLKINLLDMEAVLPEDALRASKSGMERRWAWRSFVKSAKTIYEMI
QATIVLEDMIKRDYLRNEWWYWSSLSAAAKTSTVSSLALRIFSLDSAIVYEKFCCDSNPSDKLEPSCIPEEKTVHLDSAEKIKVGRRSNKKRKEPEG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G01460 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.... Lus10022224 0 1
AT4G00450 CCT, CRP CRYPTIC PRECOCIOUS, CENTER CIT... Lus10014778 1.0 0.9824
AT3G61690 nucleotidyltransferases (.1) Lus10030266 1.4 0.9759
AT5G07980 dentin sialophosphoprotein-rel... Lus10040531 2.4 0.9714
AT5G44800 PKR1, CHR4, MI-... PICKLE RELATED 1, chromatin re... Lus10036223 3.7 0.9660
AT3G24870 Helicase/SANT-associated, DNA ... Lus10022788 5.2 0.9636
AT2G25660 EMB2410 embryo defective 2410 (.1) Lus10001859 5.7 0.9697
AT1G77800 PHD finger family protein (.1.... Lus10024777 6.5 0.9675
AT3G04740 MED14, SWP, ATM... STRUWWELPETER, ARABIDOPSIS MED... Lus10006586 8.0 0.9462
AT5G13530 KEG KEEP ON GOING, protein kinases... Lus10024135 8.0 0.9543
AT3G04740 MED14, SWP, ATM... STRUWWELPETER, ARABIDOPSIS MED... Lus10015908 8.1 0.9454

Lus10022224 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.