Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62850 223 / 2e-73 ATVEX1, SWEET5, AtSWEET5 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) AT5G40260 216 / 1e-70 SWEET8, AtSWEET8 Nodulin MtN3 family protein (.1.2) AT4G10850 216 / 3e-70 SWEET7, AtSWEET7 Nodulin MtN3 family protein (.1) AT3G28007 207 / 5e-67 SWEET4, AtSWEET4 Nodulin MtN3 family protein (.1) AT1G66770 199 / 8e-64 SWEET6, AtSWEET6 Nodulin MtN3 family protein (.1) AT1G21460 160 / 2e-48 SWEET1, AtSWEET1 Nodulin MtN3 family protein (.1) AT4G15920 158 / 8e-48 SWEET17, AtSWEET17 Nodulin MtN3 family protein (.1) AT3G16690 147 / 1e-43 SWEET16, AtSWEET16 Nodulin MtN3 family protein (.1) AT3G14770 147 / 1e-43 SWEET2, AtSWEET2 Nodulin MtN3 family protein (.1) AT5G53190 129 / 1e-36 SWEET3, AtSWEET3 Nodulin MtN3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034880 [exp] 234 / 3e-77 AT5G62850 291 / 5e-100 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10033416 [exp] 220 / 1e-71 AT5G62850 283 / 8e-97 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10002364 [exp] 218 / 4e-71 AT5G62850 268 / 7e-91 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10032426 [exp] 200 / 8e-64 AT4G10850 254 / 7e-85 Nodulin MtN3 family protein (.1) Lus10042131 [exp] 199 / 1e-63 AT5G62850 265 / 2e-89 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10003200 [exp] 197 / 9e-63 AT4G10850 255 / 1e-85 Nodulin MtN3 family protein (.1) Lus10017302 [exp] 194 / 1e-61 AT4G10850 254 / 4e-85 Nodulin MtN3 family protein (.1) Lus10023047 [exp] 166 / 1e-50 AT4G10850 218 / 4e-71 Nodulin MtN3 family protein (.1) Lus10018932 [exp] 161 / 6e-49 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G344300 [exp] 314 / 4e-109 AT3G28007 239 / 2e-79 Nodulin MtN3 family protein (.1) Potri.003G143100 [exp] 235 / 8e-78 AT4G10850 262 / 4e-88 Nodulin MtN3 family protein (.1) Potri.015G074300 [exp] 214 / 1e-69 AT5G62850 290 / 8e-100 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Potri.005G187300 [exp] 157 / 3e-47 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1) Potri.002G072800 [exp] 149 / 4e-44 AT1G21460 345 / 4e-121 Nodulin MtN3 family protein (.1) Potri.002G072700 [exp] 149 / 4e-44 AT1G21460 345 / 5e-121 Nodulin MtN3 family protein (.1) Potri.002G072600 [exp] 149 / 4e-44 AT1G21460 345 / 4e-121 Nodulin MtN3 family protein (.1) Potri.013G014400 [exp] 145 / 6e-43 AT4G15920 209 / 5e-68 Nodulin MtN3 family protein (.1) Potri.011G103600 [exp] 142 / 9e-42 AT3G14770 232 / 7e-77 Nodulin MtN3 family protein (.1) Potri.008G220600 [exp] 140 / 8e-41 AT4G15920 261 / 3e-88 Nodulin MtN3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF03083 [flax] [poplar] MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence Show only first row Show all	>Lus10022226 pacid=23139508 polypeptide=Lus10022226 locus=Lus10022226.g ID=Lus10022226.BGIv1.0 annot-version=v1.0 ATGGTGGACGCTCAACTCGCTCGTAACGTCGTCGGCATTATCGGGAATGTTGTTTCGTTTGGTCTTTTCCTGTCCCCGGTGCATACATTCCTGAGGATCA TAAAGAAGAAGGATGTGGAGGAGTTCCAGCCGTATCCATACATCGCGGCAGTGATGAACTGCATGACCTGGGTACTGTACGGGACACCGTTCATAACTCC AAACAGCATCCTGGTTATCACCATCAACGCAATTGGGCTGGGAATCGAGCTCATCTACCTGTCCATCTTCGTCTACTACGACCGCAAGAACAAGGGGAGG AAGAAGGTGTTTTACGGGATATTCGGGGAAGTGATTCTGTTGGCAGCAATTGGACTGATAGCTAAGTTTGCATTCCACACACAGAAGAACAGGAATCTGT TCGTAGGGGTGTTTGCCGACATCTTCAACATCATCATGTACGCATCCCCTCTTGCCGTGATGAACAAGGTGAGGAAGACCAAGAGTGTGGAGTACATGCC GCTGTGGCTCTCGGTTGCCAACTTCTGCAACGGTTCTATTTGGACGGCGTACGCGTTCATCAAGGTGTTTGACCCTTTCCTGTTGGTTAGCAATGGGCTC GGTGCAATCTTTGCTGTGGTCCAGCTCGTGTTCTATGCGTGGTATGCTAGGTACACCCCCGAAAAGGATGGTTCTACTGTGCCCAAGTCGGAGGTCCAGA TCACTGACATCCCTTCATCTGTTTGA
AA sequence Show only first row Show all	>Lus10022226 pacid=23139508 polypeptide=Lus10022226 locus=Lus10022226.g ID=Lus10022226.BGIv1.0 annot-version=v1.0 MVDAQLARNVVGIIGNVVSFGLFLSPVHTFLRIIKKKDVEEFQPYPYIAAVMNCMTWVLYGTPFITPNSILVITINAIGLGIELIYLSIFVYYDRKNKGR KKVFYGIFGEVILLAAIGLIAKFAFHTQKNRNLFVGVFADIFNIIMYASPLAVMNKVRKTKSVEYMPLWLSVANFCNGSIWTAYAFIKVFDPFLLVSNGL GAIFAVVQLVFYAWYARYTPEKDGSTVPKSEVQITDIPSSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62850		ATVEX1, SWEET5,...	VEGETATIVE CELL EXPRESSED1, No...		Lus10022226 [exp]	0	1
AT4G38840			SAUR-like auxin-responsive pro...		Lus10029198 [exp]	2.4	0.8846
AT4G38840			SAUR-like auxin-responsive pro...		Lus10010714 [exp]	5.5	0.8604
AT1G41830		SKS6	SKU5 SIMILAR 6, SKU5-similar 6...		Lus10025107 [exp]	5.7	0.8353
AT4G38840			SAUR-like auxin-responsive pro...		Lus10008999 [exp]	6.2	0.8387
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10018329 [exp]	6.9	0.7892
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009620 [exp]	7.7	0.8212
AT5G07030			Eukaryotic aspartyl protease f...		Lus10026171 [exp]	8.1	0.8010
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10042192 [exp]	11.2	0.8189
AT1G54200			unknown protein		Lus10026463 [exp]	11.8	0.8016
AT4G24270		EMB140	EMBRYO DEFECTIVE 140 (.1.2)		Lus10016122 [exp]	13.0	0.8058

Compare expression of checked genes

Lus10022226 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.