Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01490 617 / 0 Protein kinase superfamily protein (.1) AT5G50000 593 / 0 Protein kinase superfamily protein (.1) AT3G22750 506 / 7e-180 Protein kinase superfamily protein (.1) AT4G14780 484 / 3e-171 Protein kinase superfamily protein (.1) AT3G63260 472 / 3e-166 ATMRK1 Protein kinase superfamily protein (.1.2) AT4G31170 241 / 1e-75 Protein kinase superfamily protein (.1.2.3.4) AT2G24360 226 / 9e-70 Protein kinase superfamily protein (.1) AT1G62400 214 / 8e-66 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT2G17700 219 / 9e-66 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT5G58950 211 / 1e-62 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002368 [exp] 598 / 0 AT5G50000 659 / 0.0 Protein kinase superfamily protein (.1) Lus10042129 [exp] 597 / 0 AT5G50000 657 / 0.0 Protein kinase superfamily protein (.1) Lus10042622 [exp] 503 / 2e-178 AT3G22750 605 / 0.0 Protein kinase superfamily protein (.1) Lus10039357 [exp] 499 / 5e-177 AT3G22750 611 / 0.0 Protein kinase superfamily protein (.1) Lus10006603 [exp] 491 / 1e-173 AT3G22750 607 / 0.0 Protein kinase superfamily protein (.1) Lus10022076 [exp] 442 / 6e-155 AT3G22750 545 / 0.0 Protein kinase superfamily protein (.1) Lus10030621 [exp] 280 / 6e-91 AT3G01490 284 / 2e-92 Protein kinase superfamily protein (.1) Lus10030868 [exp] 248 / 8e-79 AT3G01490 253 / 3e-81 Protein kinase superfamily protein (.1) Lus10020374 [exp] 229 / 6e-71 AT4G31170 697 / 0.0 Protein kinase superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G072900 [exp] 625 / 0 AT3G01490 667 / 0.0 Protein kinase superfamily protein (.1) Potri.001G351300 [exp] 619 / 0 AT3G01490 664 / 0.0 Protein kinase superfamily protein (.1) Potri.012G079000 [exp] 605 / 0 AT5G50000 661 / 0.0 Protein kinase superfamily protein (.1) Potri.015G074400 [exp] 599 / 0 AT5G50000 654 / 0.0 Protein kinase superfamily protein (.1) Potri.008G156000 [exp] 506 / 8e-180 AT3G22750 608 / 0.0 Protein kinase superfamily protein (.1) Potri.010G083500 [exp] 501 / 2e-177 AT3G22750 601 / 0.0 Protein kinase superfamily protein (.1) Potri.005G213200 [exp] 501 / 2e-177 AT3G22750 575 / 0.0 Protein kinase superfamily protein (.1) Potri.002G049700 [exp] 500 / 4e-177 AT3G22750 600 / 0.0 Protein kinase superfamily protein (.1) Potri.018G001800 [exp] 238 / 2e-74 AT2G24360 663 / 0.0 Protein kinase superfamily protein (.1) Potri.006G279900 [exp] 236 / 2e-73 AT2G24360 642 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10022227 pacid=23139423 polypeptide=Lus10022227 locus=Lus10022227.g ID=Lus10022227.BGIv1.0 annot-version=v1.0 ATGAAGGAGAGGAGTAGTGAGAGTGGGGGAGGTGGTGGAGGAGCAGGGTATGTTAGAGCTGATCAAATAGATCTGAAGAGCCTTGATGAGCAGCTCCACC GCCATCTCTCTCGCCGCCATGCTTCCGACAACAACAACACCACCACCAACAACAACGACCACCAGTACCACACCACCACCACCACCACCAACAACAACAA CAACAACAACAGCAACATGATGACGAGGATCAAGAACTCCTCCAGCACAAGTCTATCCCCTGTTCCTCCTCCTCTGTCTCTGTCTTCTGCAGCTTCAACA TATTCTTCATCCGCCGCCTCTGCAGGGCGGAGGCAGGAATGGGAGATTGACCCCTCCAAGCTCATCATCAAGTCCGTTATTGCTCGCGGCACCTTTGGCA CTGTTCATCGTGGCATTTACGACGGCCTTGACGTTGCTGTGAAGCTGCTGGACTGGGGGGAAGAAGGACACAGATCAGATGCAGAGATAGCATCTCTAAG GTCTGCTTTCACTCAAGAAGTTGCTGTCTGGCACAAGCTTGATCACCCTAATGTCACCAAGTTCCTCGGGGCGACGATCGGATCTGCAAATCTACAGCTA CAGACGGAGAATGGTCACATTGGGATGCCAAGTAACATATGTTGTGTGGTGGTTGAGTACTGCCCTGGTGGTGCCTTGAAATCTTACCTGATAAAGAACA GGAGAAGGAAGCTTGCCTTTAAAGTAGTGATCCAACTGGCGCTTGACCTTGCCAGAGGAATGAGCTATCTCCACACTATGAAGATTGTCCACAGAGATGT CAAAACTGAGAACATGCTCCTCGACAAGTCCAGGACCGTCAAGATTGCTGATTTCGGTGTCGCTCGCCTCGAAGCTTCCAATCCCAACGACATGACTGGC GAGACTGGAACGCTGGGCTACATGGCGCCTGAGGTTTTGAATGGCAACCCGTACAACAGAAAGTGCGATGTTTACAGCTTCGGGATCTGTCTGTGGGAGA TATATTGCTGTGACATGCCATATCCTGACCTTAGTTTCTCAGAAATGACTTCTGCTGTTGTCCGACAGAATTTGAGGCCAGAGATACCACGATGCTGTCC GAGCTCGCTGGCGAACGTGATGAAGCGATGCTGGGATGCAAATCCTGACAGGAGGCCAGAGATGGAGGAGGTTGTTTCAATGTTAGAGGCAATCGACACT TCCAAAGGTGGTGGTATGATACCAGGGGATCATCCTCAGGGCTGCTTTTGCTTCCGTAGGCATCGAGGCCCATGA
AA sequence Show only first row Show all	>Lus10022227 pacid=23139423 polypeptide=Lus10022227 locus=Lus10022227.g ID=Lus10022227.BGIv1.0 annot-version=v1.0 MKERSSESGGGGGGAGYVRADQIDLKSLDEQLHRHLSRRHASDNNNTTTNNNDHQYHTTTTTTNNNNNNNSNMMTRIKNSSSTSLSPVPPPLSLSSAAST YSSSAASAGRRQEWEIDPSKLIIKSVIARGTFGTVHRGIYDGLDVAVKLLDWGEEGHRSDAEIASLRSAFTQEVAVWHKLDHPNVTKFLGATIGSANLQL QTENGHIGMPSNICCVVVEYCPGGALKSYLIKNRRRKLAFKVVIQLALDLARGMSYLHTMKIVHRDVKTENMLLDKSRTVKIADFGVARLEASNPNDMTG ETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEMTSAVVRQNLRPEIPRCCPSSLANVMKRCWDANPDRRPEMEEVVSMLEAIDT SKGGGMIPGDHPQGCFCFRRHRGP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01490			Protein kinase superfamily pro...		Lus10022227 [exp]	0	1
AT5G66440			unknown protein		Lus10041775 [exp]	4.7	0.9237
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10039314 [exp]	5.0	0.9285
AT1G26640			Amino acid kinase family prote...		Lus10026636 [exp]	5.9	0.8700
AT5G66440			unknown protein		Lus10028329 [exp]	6.9	0.8771
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10031315 [exp]	9.6	0.9041
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10027251 [exp]	10.6	0.8967
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10034538 [exp]	12.7	0.8477
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10013715 [exp]	14.3	0.8959
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10020115 [exp]	22.7	0.8953
AT4G10490			2-oxoglutarate (2OG) and Fe(II...		Lus10031150 [exp]	28.2	0.8843

Compare expression of checked genes

Lus10022227 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.