Plant FIBer expression Database

Lus10022228 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G40270 664 / 0 HD domain-containing metal-dependent phosphohydrolase family protein (.1)
AT5G40290 608 / 0 HD domain-containing metal-dependent phosphohydrolase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029160
[exp]
542 / 0 AT5G40270 623 / 0.0 HD domain-containing metal-dependent phosphohydrolase family protein (.1)
Lus10013004
[exp]
411 / 2e-139 AT5G40270 469 / 8e-163 HD domain-containing metal-dependent phosphohydrolase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G147800
[exp]
682 / 0 AT5G40270 685 / 0.0 HD domain-containing metal-dependent phosphohydrolase family protein (.1)
Potri.008G190200
[exp]
597 / 0 AT5G40270 615 / 0.0 HD domain-containing metal-dependent phosphohydrolase family protein (.1)
Potri.009G147750
[exp]
59 / 1e-10 AT5G40270 60 / 3e-11 HD domain-containing metal-dependent phosphohydrolase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0237 HD_PDEase PF01966 HD HD domain
Representative CDS sequence
>Lus10022228 pacid=23139346 polypeptide=Lus10022228 locus=Lus10022228.g ID=Lus10022228.BGIv1.0 annot-version=v1.0
ATGAATGTACAACTAATTAAGTATCAATTCCAGTATTCCGAGTTTAGCTCACTTAGCATAATTACAATCGTTGAGAGAAATTTCACAAGTAGGTTTTTGG
TCTCCTCATTCCCGGGAGCTTTACCACTTTTCCGGCGGTCGGCGAAGAATCACACCCTCGCAAAGTTAAGATGGGGGCTTATTGCAACGAGGAACTCTCC
TTATCTCCGATCGACGACTATGCCATTGCCCGCGACCGCCGATTCTCCAAGCATGTCCACGATAACGTCCACGGCAATATCTATCTTGACCCGGCTTCGC
GAGCTTAAACAACTAGGCGTGACGAATATGGTTTATCCAGGAGCTGTCCATTCTAGGTTTGAACATTCTCTTGGAGTGCATTGGCTAGCTGGTCAAGCTG
TTCACGACCTCAAAAATTACCAGGGTTTGGAGCTGGGAATAGACTATTTTGATATACAGGCAGTCAAACTTGCAGGACTTCTGCATGATGTTGGCCATGG
ACCGTTTAGTCATTTTTTCGAACGCGAGTTCCTCCCACAAGTGATGAGTGGTGTAAAATGGTCTCATGAGGAAATGTCTGCAAAAATGATTGACCATATA
GTGGATGAGCACAACATTGATGTTGACAGTCAGATGATGAAAAGAGTGAAGGACATGATACTAGCAACTTCAGAATCTGTACAGAAAAAAAACTTGGAAA
AGCGTTTCCTCTATGATATTGTCGCAAATGGTCGCAATGGAATTGATGTAGACAAGTTTGATTATATTGCTCGTGACAGTAGAGCTTGTGGTATAGTGTG
CAACTTCGAACATAAGAGATTAATGGAGACCATGCGGGTTATTGATGATGAGATCTGCTATCGTGCTAAAGACTATCTCACCATCCATAAGTTGTTCACC
TCCCGGGCTGACCTTTACCGCACAGTGTACACACATCCAAAAGTAAAGGCAATAGAGCTTATGATAGTCGATGCCTTGTTGCTATCAAATGAGTATTTGC
AACTTTCAGCTTACATTCAAGATCCTTCAGAGTATTGGAAGTTGGATGACACAATACTCAAAACCATTGAAACCGCTCCTGACCAGCAATTAAGAGAAGC
TAAAGATTTGATTATACGAGTGCGTAGAAGAGACTTATATAAGTTCTGCAATGAGTATTCGGTTCCTAGAGAGCAGTTAGAACACTTCAAAGATGTCACT
CCCCGTGACATTGCTTGTTCCCAGAAAGATGGTGTACTTCTGAAAGAAGAAGATATTGCAGTGAGCAATGTGGGGATTGATTTAACTCGTGGAGTGCAGA
ATCCTCTTGAAAGTATCAATTTCTTCAAGGATTATCAATGCAATGAAAAATTTAGCATCCCAGACGACCGCGTCAGTCACTTGCTACCAGCATCTTGCCA
AGATATGATAGTCAGGGTGTATGCGAAAAAGCCTGAACTGGTGGGAGCAGTGTCGGAGGCATTTGAGAACTTCCAGTTGAAAACATACGGAATAAAGACA
CAAGTACACTCAACTCCTGAGACAAAGAAACGGCGAGTTTGA
AA sequence
>Lus10022228 pacid=23139346 polypeptide=Lus10022228 locus=Lus10022228.g ID=Lus10022228.BGIv1.0 annot-version=v1.0
MNVQLIKYQFQYSEFSSLSIITIVERNFTSRFLVSSFPGALPLFRRSAKNHTLAKLRWGLIATRNSPYLRSTTMPLPATADSPSMSTITSTAISILTRLR
ELKQLGVTNMVYPGAVHSRFEHSLGVHWLAGQAVHDLKNYQGLELGIDYFDIQAVKLAGLLHDVGHGPFSHFFEREFLPQVMSGVKWSHEEMSAKMIDHI
VDEHNIDVDSQMMKRVKDMILATSESVQKKNLEKRFLYDIVANGRNGIDVDKFDYIARDSRACGIVCNFEHKRLMETMRVIDDEICYRAKDYLTIHKLFT
SRADLYRTVYTHPKVKAIELMIVDALLLSNEYLQLSAYIQDPSEYWKLDDTILKTIETAPDQQLREAKDLIIRVRRRDLYKFCNEYSVPREQLEHFKDVT
PRDIACSQKDGVLLKEEDIAVSNVGIDLTRGVQNPLESINFFKDYQCNEKFSIPDDRVSHLLPASCQDMIVRVYAKKPELVGAVSEAFENFQLKTYGIKT
QVHSTPETKKRRV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G40270 HD domain-containing metal-dep... Lus10022228
[exp]
0 1
AT4G24970 Histidine kinase-, DNA gyrase ... Lus10016745
[exp]
2.8 0.8461
AT2G42160 BRIZ1 BRAP2 RING ZnF UBP domain-cont... Lus10038095
[exp]
3.5 0.8217
AT5G44750 ATREV1, REV1 ARABIDOPSIS THALIANA HOMOLOG O... Lus10013870
[exp]
4.2 0.8316
AT4G36050 endonuclease/exonuclease/phosp... Lus10028455
[exp]
7.7 0.7999
AT2G39930 ATISA1, ISA1 ARABIDOPSIS THALIANA ISOAMYLAS... Lus10021586
[exp]
8.3 0.7809
AT4G18530 Protein of unknown function (D... Lus10002991
[exp]
8.4 0.8100
AT1G69020 Prolyl oligopeptidase family p... Lus10004631
[exp]
8.4 0.8163
AT3G57800 bHLH bHLH060 basic helix-loop-helix (bHLH) ... Lus10011307
[exp]
10.6 0.8047
AT2G25600 AKT6, SPIK Shaker pollen inward K+ channe... Lus10008082
[exp]
11.5 0.8021
AT1G10120 bHLH bHLH074, CIB4 basic helix-loop-helix (bHLH) ... Lus10006491
[exp]
13.3 0.7824

Lus10022228 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.