Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55250 329 / 4e-114 PDE329 PIGMENT DEFECTIVE 329, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008788 [exp] 506 / 0 AT3G55250 334 / 6e-116 PIGMENT DEFECTIVE 329, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G073000 [exp] 373 / 4e-131 AT3G55250 312 / 5e-107 PIGMENT DEFECTIVE 329, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022229 pacid=23139449 polypeptide=Lus10022229 locus=Lus10022229.g ID=Lus10022229.BGIv1.0 annot-version=v1.0 ATGGTGGCTGTGATTACTCCTCCTTCATCGCTATCCTCCTCCATCCCGCCATCTCTGCAAAGCTCTCGACCGGGAATCTTCGCAAACTGCACAGTACCCA GAAGACACCAGACCTCAAATGGGTTTTTCTCCGTCAGAGCTTACATGGAGAATCCCAACTCAATTTCGGGCTTCGTCAGCAAAGTCATCGGATCCCTCCC TGTAGTAGGCCTCTTAGCCAGAATTGTTAGCGACGAAGGTGGAGTTGGTGGCGATCTCATTGATTTCGCGGAGTTTAGAAGGCGAGTCGGCAAGCAATGC ACAATCATGGATTCCAGAGCCTTCGTTGAGTTCAAGGATAGGCGAGGAAAGGCTGGGGAGCCTCTGTATGTTTTGATGTGCTGTTGGGTGGCGGCTGTTG GGGCAGGACTTTTGAAATCTGAAGAGATTTTTGAAGGGGTAGCAAGGCTTCGGGTATCTGATGATATCGAATTTGAAGAGCAGAGTTTCATTGCTTTGCT GAACGAAGCTAAAGAGAGACGATCCAAGATGAAAGTGGCAGCACCTTTCGTTCCAATGGAGGTTCGAGCAGAGAAGGCAGTGGATGCAATCTACATTTGT TGCTTTGATAAGGATCCCATAGAAGAGGAAGACAAGAGGCTGCTAGGAGTGATGCTGCCTGCTGTTTTCCCATCGGTTAATCAGCAAGAGATAGATAGGA TTGTGGAGGCGAAAGCCATTAGAGTTGCTCAAGGCATGGATGAGATGAATGTTCCAGACGCAAAGCGACTAAGGAAAGAAGCAGTTCAGTTACAGATGAA AGACCTACAGTTCCTCCAGCAAAACAAAGATGATTGA
AA sequence Show only first row Show all	>Lus10022229 pacid=23139449 polypeptide=Lus10022229 locus=Lus10022229.g ID=Lus10022229.BGIv1.0 annot-version=v1.0 MVAVITPPSSLSSSIPPSLQSSRPGIFANCTVPRRHQTSNGFFSVRAYMENPNSISGFVSKVIGSLPVVGLLARIVSDEGGVGGDLIDFAEFRRRVGKQC TIMDSRAFVEFKDRRGKAGEPLYVLMCCWVAAVGAGLLKSEEIFEGVARLRVSDDIEFEEQSFIALLNEAKERRSKMKVAAPFVPMEVRAEKAVDAIYIC CFDKDPIEEEDKRLLGVMLPAVFPSVNQQEIDRIVEAKAIRVAQGMDEMNVPDAKRLRKEAVQLQMKDLQFLQQNKDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55250		PDE329	PIGMENT DEFECTIVE 329, unknown...		Lus10022229 [exp]	0	1
AT3G55250		PDE329	PIGMENT DEFECTIVE 329, unknown...		Lus10008788 [exp]	1.0	0.9524
AT1G45230			Protein of unknown function (D...		Lus10009756 [exp]	3.5	0.9384
AT4G37925		NdhM, NDH-M	NADH dehydrogenase-like comple...		Lus10029728 [exp]	4.9	0.9419
AT1G54500			Rubredoxin-like superfamily pr...		Lus10015945 [exp]	6.9	0.9387
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10001339 [exp]	7.5	0.9298
AT4G37925		NdhM, NDH-M	NADH dehydrogenase-like comple...		Lus10029727 [exp]	8.9	0.9344
AT4G30825			Tetratricopeptide repeat (TPR)...		Lus10036600 [exp]	10.1	0.9204
AT2G24060			Translation initiation factor ...		Lus10035814 [exp]	10.6	0.9128
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Lus10029979 [exp]	10.9	0.9314
AT2G36145			unknown protein		Lus10022687 [exp]	12.2	0.9282

Compare expression of checked genes

Lus10022229 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.