Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27970 558 / 0 Exonuclease family protein (.1) AT5G40310 543 / 0 C2H2ZnF Exonuclease family protein (.1) AT2G48100 303 / 2e-101 C2H2ZnF Exonuclease family protein (.1.2.3.4) AT3G15080 98 / 2e-23 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G50100 77 / 1e-15 SDN1 small RNA degrading nuclease 1 (.1) AT5G67240 65 / 4e-11 SDN3 small RNA degrading nuclease 3 (.1.2) AT5G05540 57 / 4e-09 SDN2 small RNA degrading nuclease 2 (.1.2) AT3G50090 50 / 1e-06 Exonuclease family protein (.1) AT5G25800 50 / 2e-06 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008787 [exp] 694 / 0 AT3G27970 583 / 0.0 Exonuclease family protein (.1) Lus10029642 [exp] 329 / 3e-111 AT2G48100 382 / 3e-132 Exonuclease family protein (.1.2.3.4) Lus10042687 [exp] 326 / 3e-110 AT2G48100 362 / 2e-124 Exonuclease family protein (.1.2.3.4) Lus10000997 [exp] 96 / 1e-22 AT3G15080 325 / 4e-112 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10011026 [exp] 94 / 6e-22 AT3G15080 283 / 2e-96 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10019321 [exp] 58 / 5e-09 AT5G67240 378 / 1e-122 small RNA degrading nuclease 3 (.1.2) Lus10011505 [exp] 56 / 2e-08 AT5G67240 358 / 1e-116 small RNA degrading nuclease 3 (.1.2) Lus10011504 [exp] 54 / 1e-07 AT5G67240 370 / 5e-119 small RNA degrading nuclease 3 (.1.2) Lus10018935 [exp] 47 / 1e-05 AT5G25800 635 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G073300 [exp] 607 / 0 AT3G27970 577 / 0.0 Exonuclease family protein (.1) Potri.002G215700 [exp] 338 / 4e-115 AT2G48100 374 / 3e-129 Exonuclease family protein (.1.2.3.4) Potri.001G373500 [exp] 94 / 5e-22 AT3G15080 346 / 1e-120 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.007G048000 [exp] 59 / 2e-09 AT5G67240 402 / 4e-132 small RNA degrading nuclease 3 (.1.2) Potri.005G186600 [exp] 51 / 8e-07 AT5G25800 752 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF00929 [flax] [poplar] RNase_T Exonuclease
Representative CDS sequence Show only first row Show all	>Lus10022230 pacid=23139501 polypeptide=Lus10022230 locus=Lus10022230.g ID=Lus10022230.BGIv1.0 annot-version=v1.0 ATGGAGTACAGAAATGACTCATCTGAGAACTCAAGGAATAAGTGTGCAGCGTGCTTTAGGCAGTTCAACAAAAAGGAACACCTAGTGGAGCACATGAGGA TATCCTTTCACTCAGTGCATGAACCCAAGTGTGGAATCTGTAAGAAGCACTGCAGATCCTTCGAGTCCCTGAGGGAGCATCTCATCGGACCATTACCAAA GCAAGAATGCAAGAACATTTTCAACGTCCGAGGATGCAGATTTTGTCTGACCATTCTCGACAGCTCAAATGCCCGCAGGGCTCATCAAGATAGATGTCAG TTCCCTAATGTTAATGCGGGACTGCTAGCTCGAATGGCTAATCTAGGCTTGCGCGACAGCTTGAGTACAGACAGTGGCCACTCCAGAGGGACACAAGTTG TTGCACTGGCGTGCAAGATGGTTGGAGGAGGCAGTGATGGCTCCCTTGATCTCTGTGGGAGGGTTTGCCTCGTCGACGAAAACGAAAACATTCTTTTCCA TTCCTATGTCAAACCACCAATTCCAGTCACCAATTACAGGTACGAAACCACAGGGATAAGGGCAGAATATATGAGGGATGCAGTCCCACTAAGACAGGTG CAAAAGAAGATTCAAGATTTCCTAAGCAATGGTGAACCCATGTGGAAAATTAGACCAAGAGGAGGAAGAGCTAGGATTCTCGTGGGTCATGGCTTGGACC ACGACCTTGACCGCCTTCAAGTGGAATATCCAGCTGTGATGATCAGGGACACAGCAAAGTACCCTCCATTAATGAAAACAAGCAAGCTTAGCAACTCACT CAAGTACCTAACACAGGCCTATCTTGGGTATGACATTCAAATTGGAACCCAAGACCCCTATGAAGATTGTGTGGCAACTATGAGACTGTACATGAGGATG AGATCTCAACGACATGGTGCAGAGGATAATCCAGTTGCCACTGATCCACAGAACCGTAACAATTTGGCTCCATGGAGGCAAAATGAGCTGGAGAGGATGA GCCCAGAGGACTTACTTGCTTTATCCAGATCAGATTATTACTGTTGGTGCTTGGATTCCTAG
AA sequence Show only first row Show all	>Lus10022230 pacid=23139501 polypeptide=Lus10022230 locus=Lus10022230.g ID=Lus10022230.BGIv1.0 annot-version=v1.0 MEYRNDSSENSRNKCAACFRQFNKKEHLVEHMRISFHSVHEPKCGICKKHCRSFESLREHLIGPLPKQECKNIFNVRGCRFCLTILDSSNARRAHQDRCQ FPNVNAGLLARMANLGLRDSLSTDSGHSRGTQVVALACKMVGGGSDGSLDLCGRVCLVDENENILFHSYVKPPIPVTNYRYETTGIRAEYMRDAVPLRQV QKKIQDFLSNGEPMWKIRPRGGRARILVGHGLDHDLDRLQVEYPAVMIRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDIQIGTQDPYEDCVATMRLYMRM RSQRHGAEDNPVATDPQNRNNLAPWRQNELERMSPEDLLALSRSDYYCWCLDS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27970			Exonuclease family protein (.1...		Lus10022230 [exp]	0	1
					Lus10006458 [exp]	1.0	0.9071
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10043009 [exp]	5.0	0.7621
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10009477 [exp]	6.3	0.7913
AT3G07070			Protein kinase superfamily pro...		Lus10022799 [exp]	10.9	0.6857
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10011505 [exp]	16.4	0.7242
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10026685 [exp]	31.1	0.6865
					Lus10021106 [exp]	32.7	0.6829
AT2G18470		AtPERK4, PERK4	proline-rich extensin-like rec...		Lus10026027 [exp]	51.6	0.6575
					Lus10017946 [exp]	53.1	0.6716
AT5G04830			Nuclear transport factor 2 (NT...		Lus10028847 [exp]	69.0	0.6806

Compare expression of checked genes

Lus10022230 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.