Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27960 741 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G27500 618 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G10840 572 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G31240 144 / 6e-36 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G37590 44 / 0.0003 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008786 [exp] 1256 / 0 AT3G27960 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002376 [exp] 705 / 0 AT1G27500 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042120 [exp] 697 / 0 AT1G27500 828 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017304 [exp] 583 / 0 AT4G10840 932 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10003201 [exp] 582 / 0 AT4G10840 927 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10033883 [exp] 127 / 3e-30 AT2G31240 737 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003563 [exp] 124 / 3e-29 AT2G31240 734 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G094700 [exp] 821 / 0 AT3G27960 736 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G075300 [exp] 744 / 0 AT1G27500 780 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G080100 [exp] 680 / 0 AT1G27500 756 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G087800 [exp] 603 / 0 AT4G10840 864 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.003G143200 [exp] 584 / 0 AT4G10840 843 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.014G100400 [exp] 529 / 0 AT4G10840 707 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.002G173400 [exp] 528 / 0 AT4G10840 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G222900 [exp] 160 / 3e-41 AT2G31240 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G085200 [exp] 47 / 5e-05 AT5G37590 530 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022231 pacid=23139404 polypeptide=Lus10022231 locus=Lus10022231.g ID=Lus10022231.BGIv1.0 annot-version=v1.0 ATGCCCGGACTGGCTATCATGGGATCAGAAGGAGAAAATGGCGGGACAGAGCAGGGTAACACTAATGGCAAGCAAAAATCAGGAGAAAGCACGATGATGA GTCAACGCAGCGGCGACTCTATTGATCTAGCCATTGACGGCGTGATCGATACCTCCATAGAGCAGCTATATCACAACGTCTGTGAGATGCAGGAGAGTTC TGATGATCCTTCCCCTTCAAGGAGAAGCTTCTTCTCCTACGGCGAAGAGTCGAGGATCGACTCCGAATTGTGCCATCTAGTCGGAGACGTTAGGATTATG GAGATGATGATGACAAAAGAGGTTGTTGCGACAGAGAACGCAGATAAAAATAGTGAAAATAACGGCGGCGTTGACCATAATTTGCCTTTTACAGGCAAGA AGATCAGGAGGAGCCAGGCTGAGAGCATTCAGAAGCAGCTTTTCAGGCTGCAATCCGAGTTTGGTGCTTCTGAGAAAAAGCACCAAACGTTGAGAAGGCC TAGGCCTCCAAATTCGAAGAGGCCTATTAGGAAAGTTCAGATTATAAATATGGCTGATGATGATGATCATCAGCTTGTTGGACCGTTACTGCTGAAACAA ACAAGAGAGATGATCTCTTCGGGGGAGAACCCAAAACGGGTTCTCAAGTTTGCAACCAGAGCAGCCAAATCATTTGAGGAACATTCAAACGACGACGGGG AGGCACCGAATTTGGAACATGTCATGTCCTTACATGTCCTAGCATCAATACATTGCAGCTTAGGCCAGTACAACGAAGCCATCCCAGTTCTAGAAAAGTC AATACAAATTCCGGTCATAGAATACGGCCAGGATCATTCTCTAGCCAAGTTTGCAGGATGCATGCAGTTAGGTGACACTTATTCAATGTTGGGACAGATT GAGAACTCAATATTATGCTACACAGCTGGTTTGGAGATTCAGAAGCAAGTCCTGGGCGAAATGGATCCTCGAGTTGGCGAAACATGCCGGTATGTAGCTG AAGCTCATGTCCAGGCATTACAATTTGATGAGGCTGCAAAAGTTTGTCAATTGGCGCTTGACATCCACAGGGAGAAAGGAGGAGGTGCTTCGTCGATGGA GGAAGCCGCGGATAGAAGACTGATGGGACTAATCTGCGACGCGAGGGGAGATTACGATGCTGCCCTCGAGCATTATGTTCTTGCAAGCATGTCAATGTCA GCAAATGGCCAGGAGATGGAAGTTGCTGCTATTGATTGCAGCATTGGAGATGCCTATCTGTCGTTGGCGCGATACGATGAGGCTGTATTTGCGTACAAGA AGGCACTTGCGAGTTTCAAATCAAGCAAAGAAGGAGAGAAGTACAGCGCATCAGTTGCATCTGTGTTTGTGAGGCTGGCTGATCTGTATAACAAGATTGG AAAATATAAGGACTCAAAATCCTACTGCGAGAATGCTCTGAAGATCTACGCAAAGCGTGACAGGATCATGGCGGCTGAGGATATAGCCAGTGGGTTTATT GACATCGCTGCGATATACCAGTCGATGGATGAGCTTGATCAGGCTATCAAGTTGCTGAGGAAGGCTCTGAAGAAGATAAATCATAATAATGGAGATGATG ATGGTGATGATATTTTGGGCCAGCGAAGTACAGTCGCTGGGATTGAAGCTCAGATTGGGGTTATGCATTACATGACGGGGAACTTCCCCGAGTCGTACAG AACGTTCAAGAGCGCGATAGCAAAAATGAGAGCGAGCGGGGAGAAGAAATCGGCCATGTTCGCTATTGCGTTGAACCAAATGGGGCTAGCCTGCGTGCAG CTTTACGCGATCAACGAGGCTGCTGATCTGTTTGAAGAAGCTAGGACCATTTTAGAGAAAGAATATGGACCATATCATCCCGACACATTAGCTGTGTACA GCAATCTAGCAGGAACTTATGATGCTATGGGGAGATTGGATGATGCAATTGAGATATTGGAGAAAGTGGTTAGAATGAGGGAACAGAAGCTGGGAACAGC AAATCCAGAAGTGGTGGATGAGAAGAGGAGGCTTGGTGAGCTGCTGAAAGAAGCTGGAAGGACAAGGGACAGGGAATCTATAGCATTGCTAGCTTTCCTT GACACTCATGAAGTTGTTGAGAGGGCTGAAATGATTGAGCTAGCTTATTAA
AA sequence Show only first row Show all	>Lus10022231 pacid=23139404 polypeptide=Lus10022231 locus=Lus10022231.g ID=Lus10022231.BGIv1.0 annot-version=v1.0 MPGLAIMGSEGENGGTEQGNTNGKQKSGESTMMSQRSGDSIDLAIDGVIDTSIEQLYHNVCEMQESSDDPSPSRRSFFSYGEESRIDSELCHLVGDVRIM EMMMTKEVVATENADKNSENNGGVDHNLPFTGKKIRRSQAESIQKQLFRLQSEFGASEKKHQTLRRPRPPNSKRPIRKVQIINMADDDDHQLVGPLLLKQ TREMISSGENPKRVLKFATRAAKSFEEHSNDDGEAPNLEHVMSLHVLASIHCSLGQYNEAIPVLEKSIQIPVIEYGQDHSLAKFAGCMQLGDTYSMLGQI ENSILCYTAGLEIQKQVLGEMDPRVGETCRYVAEAHVQALQFDEAAKVCQLALDIHREKGGGASSMEEAADRRLMGLICDARGDYDAALEHYVLASMSMS ANGQEMEVAAIDCSIGDAYLSLARYDEAVFAYKKALASFKSSKEGEKYSASVASVFVRLADLYNKIGKYKDSKSYCENALKIYAKRDRIMAAEDIASGFI DIAAIYQSMDELDQAIKLLRKALKKINHNNGDDDGDDILGQRSTVAGIEAQIGVMHYMTGNFPESYRTFKSAIAKMRASGEKKSAMFAIALNQMGLACVQ LYAINEAADLFEEARTILEKEYGPYHPDTLAVYSNLAGTYDAMGRLDDAIEILEKVVRMREQKLGTANPEVVDEKRRLGELLKEAGRTRDRESIALLAFL DTHEVVERAEMIELAY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27960			Tetratricopeptide repeat (TPR)...		Lus10022231 [exp]	0	1
AT1G19170			Pectin lyase-like superfamily ...		Lus10039909 [exp]	1.7	0.9752
AT5G46340		RWA1	REDUCED WALL ACETYLATION 1, O-...		Lus10003348 [exp]	2.0	0.9693
AT4G19670			RING/U-box superfamily protein...		Lus10040616 [exp]	6.9	0.9414
AT1G17270			O-fucosyltransferase family pr...		Lus10037461 [exp]	7.3	0.9584
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10007528 [exp]	8.2	0.9509
AT5G50090			unknown protein		Lus10043461 [exp]	8.5	0.9235
AT1G29890		RWA4	REDUCED WALL ACETYLATION 4, O-...		Lus10000367 [exp]	8.5	0.9632
AT3G23690	bHLH	bHLH077	basic helix-loop-helix (bHLH) ...		Lus10021968 [exp]	10.2	0.9310
AT3G42950			Pectin lyase-like superfamily ...		Lus10027646 [exp]	11.1	0.9662
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Lus10035836 [exp]	11.5	0.9648

Compare expression of checked genes

Lus10022231 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.