Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15802 104 / 1e-30 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008785 [exp] 197 / 5e-67 AT5G15802 96 / 6e-27 unknown protein Lus10017029 [exp] 39 / 0.0005 AT5G03870 296 / 3e-97 Glutaredoxin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G099600 [exp] 150 / 2e-48 AT5G15802 117 / 1e-35 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022232 pacid=23139466 polypeptide=Lus10022232 locus=Lus10022232.g ID=Lus10022232.BGIv1.0 annot-version=v1.0 ATGGCAAATATAACGGAAAGTGAATTGGCCGGATTTGGAGTGGGAACGTTGCTATTAGTGGCCACCATTGCTGCTCCTAAACTCGACGCCCTCATCTCTG CTTCTCAGAGGAGCTCCCTAGGGATGTGCAAGAGATGCGGGGACTTGAGGATGATAGCGTGCTCAAATTGTAAAGGAACTGGATTAATGAAAGCAGGTGA GCCATTTCTAAGCTTCAGATTACTAGATGACTTGTATCAGTCCATTGGCGGTGAACAACAACATGTAAACCGTGTCAACTGTAGTAAATGCAAAGCCAAG GGTCACTTCACCTGTCCTAACTGCTCCCCAGGGAACTAG
AA sequence Show only first row Show all	>Lus10022232 pacid=23139466 polypeptide=Lus10022232 locus=Lus10022232.g ID=Lus10022232.BGIv1.0 annot-version=v1.0 MANITESELAGFGVGTLLLVATIAAPKLDALISASQRSSLGMCKRCGDLRMIACSNCKGTGLMKAGEPFLSFRLLDDLYQSIGGEQQHVNRVNCSKCKAK GHFTCPNCSPGN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15802			unknown protein		Lus10022232 [exp]	0	1
AT1G49975			unknown protein		Lus10006137 [exp]	1.0	0.9644
AT2G01870			unknown protein		Lus10009946 [exp]	3.0	0.9366
AT3G16250		PnsB3, NDF4	Photosynthetic NDH subcomplex...		Lus10025809 [exp]	4.7	0.9438
AT4G11880	MADS	AGL14	AGAMOUS-like 14 (.1)		Lus10014144 [exp]	10.2	0.8931
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Lus10022449 [exp]	12.4	0.8977
AT2G17972			unknown protein		Lus10026591 [exp]	12.7	0.8577
AT1G49975			unknown protein		Lus10033771 [exp]	13.0	0.9178
AT3G10060			FKBP-like peptidyl-prolyl cis-...		Lus10027729 [exp]	15.5	0.9223
AT1G07700			Thioredoxin superfamily protei...		Lus10032343 [exp]	16.4	0.9174
AT1G32470			Single hybrid motif superfamil...		Lus10035374 [exp]	16.9	0.9156

Compare expression of checked genes

Lus10022232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.