Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27950 279 / 5e-92 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G14450 263 / 5e-85 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G67830 226 / 4e-71 ATFXG1 Arabidopsis thaliana alpha-fucosidase 1, alpha-fucosidase 1 (.1) AT3G26430 223 / 9e-70 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G54790 182 / 3e-54 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) AT3G05180 171 / 6e-50 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G09390 166 / 7e-48 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G62280 162 / 1e-46 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G56670 162 / 2e-46 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G01130 155 / 1e-43 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008784 [exp] 504 / 3e-180 AT3G27950 391 / 2e-135 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10032094 [exp] 255 / 5e-82 AT5G14450 578 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10014592 [exp] 246 / 2e-78 AT5G14450 573 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006224 [exp] 248 / 1e-75 AT3G26430 342 / 5e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029638 [exp] 187 / 7e-56 AT1G54790 443 / 2e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10036873 [exp] 183 / 4e-55 AT3G26430 275 / 1e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029980 [exp] 173 / 2e-50 AT1G54790 578 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10029639 [exp] 169 / 3e-49 AT1G54790 421 / 4e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10001522 [exp] 166 / 6e-48 AT1G09390 459 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G342600 [exp] 276 / 1e-90 AT5G14450 595 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G185500 [exp] 248 / 3e-79 AT3G26430 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G047900 [exp] 248 / 3e-79 AT3G26430 504 / 1e-179 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G074400 [exp] 223 / 1e-69 AT3G26430 388 / 8e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G177700 [exp] 221 / 8e-69 AT3G26430 407 / 2e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G083700 [exp] 218 / 1e-67 AT3G26430 417 / 3e-145 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G083800 [exp] 205 / 9e-63 AT3G26430 405 / 8e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G026300 [exp] 184 / 5e-55 AT1G54790 605 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.005G038800 [exp] 184 / 6e-55 AT1G54790 595 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.002G216000 [exp] 180 / 4e-53 AT1G54790 474 / 1e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10022233 pacid=23139413 polypeptide=Lus10022233 locus=Lus10022233.g ID=Lus10022233.BGIv1.0 annot-version=v1.0 ATGAGGGGAGAAGGGATCTTTGGACTTCTCTTCAAGATTGTGAACAGAAATGGATTGCTTGATGCTGCTGCTCCTTGGACTGTTTGGGACTCTGGTCCTG AACATGGGGACAGATGCAACAACAACATAACAACATTGGTGAAAGGTAATGACAAGTTTCAAAAATGCAAGTTCCCGGCAGTGTACAACTTTGGCGACTC CAACTCCGATACCGGAGGGAGATCTGCAGCGTTTGGAGAGTTCCCTCCACCCAACGGCGAAACCTTCGTTGGACGTCCTTCAGGGAGAGTTTGTGATGGC TGCCTTATCATAGATTTTATTGCTGAGAGACTGAAATTGACATATCTAAGTGCATACCTGGACTCCGTCGAGACAGATTTCAGACATGGTGCAAACTTTG CTACTGGTGGCTCATCCATTCGTCCAGGCGGTTACAGCCCCTGGGCGTACAGATTTCCCAGTTCAAGCGGTTCAAAACTCGGACCAACCAACTTTATCAA AGCCATGTTAGCACCAACGAGGACTTCTCAACAGCTCACATTGGACATAGGACAGAATGATCTCGCCTTTGGCTTCCAACATTCATCAGTCGAAGAGGTT CAGAAGTCCATACCTGATATTTTGAGCCAGCTTTTTGAGGCAGTGCAGATCCTGAAAACTTGGATAGAAATGGATGTCAGGTCCCACAAAGACGTTGCCA AGGAGTTCAACAGGCAACTCGAAGACAAAGTTTCCCAGCTTACGGAAAAGCTTCCTGGTTCAGCTTTCACATATGTTGATGTGTATTCAGCCAAGTATCA ACTGATTAGCACAGCAACGAATCAAGGTTTCGTGAATCCGATGGAGTTCTGTTGCGGCAGCTACTACGGCTATCACATAGACTGTGGGAAGAAAGCTGTG GTGAATGGAACAGAATATGGTAATCCATGCAAGTATCCATCAATGCACGTGAGCTGGGACGGAGTACACTACTCTGAAGCAGCTAATGTGTGGGTGGCAA ATAGGATACTCAATGGCAGCCTTTCTCATCCGCCTGCTTCTGTTCAGCAGGCTTGTGGGCACATCTAG
AA sequence Show only first row Show all	>Lus10022233 pacid=23139413 polypeptide=Lus10022233 locus=Lus10022233.g ID=Lus10022233.BGIv1.0 annot-version=v1.0 MRGEGIFGLLFKIVNRNGLLDAAAPWTVWDSGPEHGDRCNNNITTLVKGNDKFQKCKFPAVYNFGDSNSDTGGRSAAFGEFPPPNGETFVGRPSGRVCDG CLIIDFIAERLKLTYLSAYLDSVETDFRHGANFATGGSSIRPGGYSPWAYRFPSSSGSKLGPTNFIKAMLAPTRTSQQLTLDIGQNDLAFGFQHSSVEEV QKSIPDILSQLFEAVQILKTWIEMDVRSHKDVAKEFNRQLEDKVSQLTEKLPGSAFTYVDVYSAKYQLISTATNQGFVNPMEFCCGSYYGYHIDCGKKAV VNGTEYGNPCKYPSMHVSWDGVHYSEAANVWVANRILNGSLSHPPASVQQACGHI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27950			GDSL-like Lipase/Acylhydrolase...		Lus10022233 [exp]	0	1
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10003517 [exp]	3.2	0.8902
AT3G22750			Protein kinase superfamily pro...		Lus10039357 [exp]	5.0	0.8396
AT4G01580	B3		AP2/B3-like transcriptional fa...		Lus10000750 [exp]	7.3	0.8610
AT1G27920		MAP65-8	microtubule-associated protein...		Lus10015789 [exp]	10.8	0.8943
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10004881 [exp]	13.6	0.7920
AT4G18640		MRH1	morphogenesis of root hair 1, ...		Lus10031290 [exp]	14.8	0.8861
AT5G65500			U-box domain-containing protei...		Lus10035947 [exp]	14.9	0.8542
AT2G24370			Protein kinase protein with ad...		Lus10026989 [exp]	15.5	0.8575
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10008836 [exp]	19.5	0.8440
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10013967 [exp]	20.7	0.8814

Compare expression of checked genes

Lus10022233 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.