Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27925 619 / 0 DEGP, DegP1, DEG1 DegP protease 1 (.1) AT5G39830 279 / 8e-89 DEG8, DEGP8 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) AT4G18370 176 / 7e-51 DEGP5, DEG5, HHOA PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) AT5G27660 107 / 5e-25 Trypsin family protein with PDZ domain (.1) AT2G47940 77 / 1e-14 EMB3117, DEGP2 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) AT5G40200 60 / 3e-09 DEGP9 DegP protease 9 (.1) AT1G65640 47 / 3e-05 DEGP4 DegP protease 4 (.1) AT5G36950 44 / 0.0002 DEGP10 DegP protease 10 (.1) AT5G40560 43 / 0.0003 DEGP13 DegP protease 13 (.1) AT1G28320 43 / 0.0006 DEG15 protease-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008781 [exp] 743 / 0 AT3G27925 641 / 0.0 DegP protease 1 (.1) Lus10007262 [exp] 268 / 6e-85 AT5G39830 597 / 0.0 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) Lus10042822 [exp] 164 / 5e-46 AT4G18370 329 / 3e-112 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) Lus10028120 [exp] 147 / 2e-39 AT4G18370 284 / 4e-94 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) Lus10037815 [exp] 100 / 2e-22 AT5G27660 491 / 9e-173 Trypsin family protein with PDZ domain (.1) Lus10017093 [exp] 64 / 7e-11 AT5G27660 393 / 9e-135 Trypsin family protein with PDZ domain (.1) Lus10005931 [exp] 57 / 2e-08 AT2G47940 452 / 8e-155 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Lus10014524 [exp] 50 / 3e-06 AT5G40200 843 / 0.0 DegP protease 9 (.1) Lus10032163 [exp] 49 / 7e-06 AT5G40200 843 / 0.0 DegP protease 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G348800 [exp] 636 / 0 AT3G27925 595 / 0.0 DegP protease 1 (.1) Potri.004G129200 [exp] 284 / 2e-90 AT5G39830 595 / 0.0 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) Potri.011G083300 [exp] 176 / 6e-51 AT4G18370 355 / 4e-123 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) Potri.013G018300 [exp] 103 / 2e-23 AT5G27660 516 / 0.0 Trypsin family protein with PDZ domain (.1) Potri.014G135200 [exp] 64 / 2e-10 AT2G47940 932 / 0.0 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Potri.002G207200 [exp] 63 / 3e-10 AT2G47940 931 / 0.0 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Potri.012G077900 [exp] 57 / 2e-08 AT5G40200 845 / 0.0 DegP protease 9 (.1) Potri.015G073100 [exp] 52 / 6e-07 AT5G40200 842 / 0.0 DegP protease 9 (.1) Potri.018G001500 [exp] 51 / 1e-06 AT5G27660 102 / 2e-23 Trypsin family protein with PDZ domain (.1) Potri.008G079900 [exp] 50 / 2e-06 AT5G36950 857 / 0.0 DegP protease 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0124 [flax] [poplar] Peptidase_PA PF00089 [flax] [poplar] Trypsin Trypsin
Representative CDS sequence Show only first row Show all	>Lus10022234 pacid=23139365 polypeptide=Lus10022234 locus=Lus10022234.g ID=Lus10022234.BGIv1.0 annot-version=v1.0 ATGGGGATCCAAATGGCTTCCTCTTCTTCGTCTTCTCTAGCTTCAACCTTTCTCCCTCGCTCATGTCCAGCCAGTACTACCACCTTCCTTCTGCCATCAC ACTCTCTTCCTCTTCCCAAACCATCTGCCTTCCACCGCTGCCGGACCTTCTCCTCTTCACGCGCTGTCCTCTCCTTGCTCCGTCCTACTTCCGGCGGTTC TCCTCCTACTCCTCGCCCTTCGATCTCAGCTGCTCTCTTTCCTGCGCGGAAACACTCTATCTCATCCTCCGACTCTTCCTCTTCTTCTTCATCTTCTTCT TTTTCTTCTGTTGTGGATGCGCTGTTTGTGGTGTGCACCTCCGTCGCCCTGTCCTTGACCTTGTTCCTGGCCGATGTTGACTCCGCCGCTGCTTTTGTCG TAACTCCGCCGAGGAAGTTGCAGGCCGATGAATTGGCTACTGTTCGCCTCTTCCAGGAGAATACTCCTTCCGTTGTCTACATCACCAATTTGGCTGTCAA GCAAGACGCCTTCACTCTGGATGTGTTGGAGGTGCCGCAGGGTTCAGGATCCGGGTTTGTATGGGACAAAGATGGTCACATTGTCACCAATTATCACGTC ATTCGCGGTGCTTCCGATCTGAAAGTGACTCTATCGGACCAGTCGGCTTATGATGCAACGGTTGTTGGGTTTGACCAAGACAAAGACGTAGCTGTGTTGA GAGTTGATGCTCCCAAGGACAAACTGAAACCTATACCTGTTGGTGTCTCTGCTGACTTGCTTGTCGGTCAGAAAGTATTCGCTATTGGCAACCCTGTGAG TAGGATCCAGCTCTCCTTAAATTTTGAAAAGAAGAATGCAAACTGCGGCACCCTTGTAACATTTCTTGAGCATCAAAATCTAGCTTGTGTTTGCGCTAGT TTCACGAAGATTTTTGGCCTTGACCATACACTTACCACCGGTGTCATCAGTGGACTCCGTAGAGAAATAAGCTCTGCTGCTACAGGGCGTCCTATTCAGG ATGTTATACAGACAGATGCTGCAATTAATCCAGGGAATAGTGGAGGGCCGTTACTTGATAGTGCAGGAAACCTAATTGGGATCAACACAGCCATCTATTC ACCGTCTGGGGCATCTTCTGGTGTCGGGTTTTCAATTCCAGTTGACACTGTGAGCGGCATTGTCGATCAACTAGTGAAGTTTGGAAAAGTGACAAGACCA ATTTTAGGAATAAAATTTGCGCCGGATCAATCAGTGGAGCAATTGGGTGTTAGTGGGGTGCTGGTCTTAGATGCGCCTGCAAATGGTCCAGCTGGGAAAG CGGGCCTGCTACCGACTAAACGTGATGCTTATGGTAGACTTGTGTTGGGGGATATCATAACATCCTTGAACGGGAAAAAGGTCGCAAATGGAAGTGATTT GTACAGAATTCTTGACCAATGTAACGTGGGTGATAAGATTGTTGTGGAGGTTCTGCGTGGGGATCACAAGGAGAAGATACCGGTGATTCTTGAACCAAAG CCGGACGAGTCGTAG
AA sequence Show only first row Show all	>Lus10022234 pacid=23139365 polypeptide=Lus10022234 locus=Lus10022234.g ID=Lus10022234.BGIv1.0 annot-version=v1.0 MGIQMASSSSSSLASTFLPRSCPASTTTFLLPSHSLPLPKPSAFHRCRTFSSSRAVLSLLRPTSGGSPPTPRPSISAALFPARKHSISSSDSSSSSSSSS FSSVVDALFVVCTSVALSLTLFLADVDSAAAFVVTPPRKLQADELATVRLFQENTPSVVYITNLAVKQDAFTLDVLEVPQGSGSGFVWDKDGHIVTNYHV IRGASDLKVTLSDQSAYDATVVGFDQDKDVAVLRVDAPKDKLKPIPVGVSADLLVGQKVFAIGNPVSRIQLSLNFEKKNANCGTLVTFLEHQNLACVCAS FTKIFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINPGNSGGPLLDSAGNLIGINTAIYSPSGASSGVGFSIPVDTVSGIVDQLVKFGKVTRP ILGIKFAPDQSVEQLGVSGVLVLDAPANGPAGKAGLLPTKRDAYGRLVLGDIITSLNGKKVANGSDLYRILDQCNVGDKIVVEVLRGDHKEKIPVILEPK PDES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27925		DEGP, DegP1, DE...	DegP protease 1 (.1)		Lus10022234 [exp]	0	1
AT1G74730			Protein of unknown function (D...		Lus10042179 [exp]	4.2	0.9318
AT4G35250			NAD(P)-binding Rossmann-fold s...		Lus10003328 [exp]	8.9	0.9182
AT1G71500			Rieske (2Fe-2S) domain-contain...		Lus10001278 [exp]	12.4	0.9120
AT1G67840		CSK	chloroplast sensor kinase (.1....		Lus10011413 [exp]	12.4	0.8853
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10029680 [exp]	13.6	0.9079
AT3G19490		ATNHD1	ARABIDOPSIS THALIANA NA/H ANTI...		Lus10014094 [exp]	14.5	0.8912
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Lus10002078 [exp]	16.7	0.9076
AT2G36895			unknown protein		Lus10023001 [exp]	18.3	0.8905
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Lus10021824 [exp]	19.0	0.9003
AT4G35250			NAD(P)-binding Rossmann-fold s...		Lus10022632 [exp]	20.5	0.8995

Compare expression of checked genes

Lus10022234 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.