Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01500 395 / 7e-138 SABP3, ATBCA1, CA1, ATSABP3 ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, BETA CARBONIC ANHYDRASE 1, carbonic anhydrase 1 (.1.2.3) AT5G14740 338 / 1e-116 BETACA2, CA18, CA2 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) AT1G70410 265 / 8e-88 ATBCA4 beta carbonic anhydrase 4 (.1.2.3) AT1G23730 239 / 1e-77 ATBCA3 BETA CARBONIC ANHYDRASE 3, beta carbonic anhydrase 3 (.1) AT4G33580 182 / 5e-55 ATBCA5 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) AT1G58180 164 / 6e-49 ATBCA6 A. THALIANA BETA CARBONIC ANHYDRASE 6, beta carbonic anhydrase 6 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008780 [exp] 507 / 0 AT3G01500 357 / 1e-122 ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, BETA CARBONIC ANHYDRASE 1, carbonic anhydrase 1 (.1.2.3) Lus10016443 [exp] 324 / 5e-110 AT5G14740 298 / 4e-101 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Lus10030614 [exp] 268 / 9e-89 AT1G70410 351 / 6e-123 beta carbonic anhydrase 4 (.1.2.3) Lus10030874 [exp] 249 / 2e-81 AT5G14740 319 / 8e-111 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Lus10015833 [exp] 199 / 1e-60 AT4G33580 306 / 2e-103 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Lus10020415 [exp] 189 / 4e-55 AT1G15820 379 / 9e-130 light harvesting complex photosystem II subunit 6 (.1) Lus10009274 [exp] 167 / 3e-49 AT4G33580 281 / 2e-94 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Lus10015892 [exp] 115 / 9e-30 AT4G33580 205 / 3e-65 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G348900 [exp] 403 / 6e-141 AT3G01500 429 / 2e-151 ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, BETA CARBONIC ANHYDRASE 1, carbonic anhydrase 1 (.1.2.3) Potri.010G041100 [exp] 307 / 4e-104 AT5G14740 392 / 4e-138 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Potri.008G189800 [exp] 295 / 8e-100 AT5G14740 375 / 5e-133 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Potri.015G075902 [exp] 249 / 2e-81 AT5G14740 304 / 1e-104 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Potri.015G076000 [exp] 248 / 6e-81 AT5G14740 303 / 4e-104 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Potri.017G044700 [exp] 211 / 7e-66 AT4G33580 339 / 8e-117 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Potri.007G114600 [exp] 203 / 6e-63 AT4G33580 335 / 4e-115 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Potri.005G156600 [exp] 187 / 1e-56 AT4G33580 303 / 1e-102 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00484 [flax] [poplar] Pro_CA Carbonic anhydrase
Representative CDS sequence Show only first row Show all	>Lus10022235 pacid=23139447 polypeptide=Lus10022235 locus=Lus10022235.g ID=Lus10022235.BGIv1.0 annot-version=v1.0 ATGTCGACTGCAGCTTCACTAAACGGTGGTTGCTTCCTTACTTCCCTCTCCACTCCCAAACCCACCAAATCACAAATAAGACTACCATTAGCCTCCTCCC ACCAAGTCATCCTTGCTAAGCTCAACAACACTCCCTCTTTCTCTTCTTCTTCTTCTTCTTCTTCTAACAACGCTACACCTGTCCCTAGGCTCATCAGAAA CCAGCCCGTTTTCGCTGCCCCTGCCCCTCTTCTCAATCCTACTTCGGGTGAGGAAGACATGTCCAAGGACTACCAGGAAGCTATCAAGGGTCTTGAGAAG CTCCTCAGCGAGAAGGAAGAACTGAAGGAGGTGGCAGCAGAGAAAGTGGAGCAGATAAAGGCAGAGCTGACAGCAAGTGCTTCTGGTACTAAGCCCTTCG ATGCTGTCCAGCGTATCAAAGATGGCTTCATCAAGTTCAAGCACGAGAAATACCAGACCAACCCGAAACTGTACGGAGAGCTTGCCAAAGGGCAGAGCCC CAAGTACATGGTGTTTGCGTGCTCGGACTCGAGGGTGTGCCCCTCGCACGTTATGGATTTCCAGCCAGGAGAGGCATTCGTGGTGCGTAACGTAGCCAAC ATGGTCCCGGAATTCGACCAGGTGAAGTACGCTGGGGTTGGGGCAGCGGTGGAGTACGCGGTGCTGCATCTCAAGGTTGAGAACATTGTCGTGATTGGTC ACAGCGCCTGCGGTGGTATTAAGGGCCTCATGTCCTTCCCCTACGACGGCAACACTTCCACTGATTTCATAGAGGACTGGGTGAAGATTGGGTTCCCGGC GAAGAAGAAGGTGTTGGCTGAGAATGGGAGTGCTGGATTTGGAGACCAATGCACCACCTGTGAAAAGGAGGCGGTGAATGTGTCGCTGGCAAATCTGCTG ACATATCCATTTGTGAGGGATGGACTCTGCAGCAAAACACTGAAGCTGTACGGAGGATACTATGACTTTGTGAATGGAGGGTTTGAGCTGTGGAGCCTTG ACTATGGCCTTTCAGCACCCATCTCAGTTAAAGATGTGGCCACCATTCTCCACTGGAAGCTCTAA
AA sequence Show only first row Show all	>Lus10022235 pacid=23139447 polypeptide=Lus10022235 locus=Lus10022235.g ID=Lus10022235.BGIv1.0 annot-version=v1.0 MSTAASLNGGCFLTSLSTPKPTKSQIRLPLASSHQVILAKLNNTPSFSSSSSSSSNNATPVPRLIRNQPVFAAPAPLLNPTSGEEDMSKDYQEAIKGLEK LLSEKEELKEVAAEKVEQIKAELTASASGTKPFDAVQRIKDGFIKFKHEKYQTNPKLYGELAKGQSPKYMVFACSDSRVCPSHVMDFQPGEAFVVRNVAN MVPEFDQVKYAGVGAAVEYAVLHLKVENIVVIGHSACGGIKGLMSFPYDGNTSTDFIEDWVKIGFPAKKKVLAENGSAGFGDQCTTCEKEAVNVSLANLL TYPFVRDGLCSKTLKLYGGYYDFVNGGFELWSLDYGLSAPISVKDVATILHWKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01500		SABP3, ATBCA1, ...	ARABIDOPSIS THALIANA SALICYLIC...		Lus10022235 [exp]	0	1
AT1G32060		PRK	phosphoribulokinase (.1)		Lus10011060 [exp]	3.7	0.9457
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10007837 [exp]	4.5	0.9315
AT1G64770		PnsB2, NDH45, N...	Photosynthetic NDH subcomplex...		Lus10007429 [exp]	4.9	0.9435
AT4G24700			unknown protein		Lus10041942 [exp]	5.0	0.9365
AT3G63140		CSP41A	chloroplast stem-loop binding ...		Lus10014669 [exp]	7.1	0.9442
AT4G26530			Aldolase superfamily protein (...		Lus10005850 [exp]	7.4	0.9311
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Lus10035545 [exp]	10.7	0.9356
AT3G63140		CSP41A	chloroplast stem-loop binding ...		Lus10006931 [exp]	10.8	0.9414
AT4G26530			Aldolase superfamily protein (...		Lus10032956 [exp]	11.8	0.9215
AT3G29240			Protein of unknown function (D...		Lus10005224 [exp]	13.0	0.9060

Compare expression of checked genes

Lus10022235 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.