Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01510 567 / 0 LSF1 like SEX4 1 (.1) AT3G10940 117 / 1e-29 LSF2 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1) AT3G52180 106 / 2e-25 ATSEX4, SEX4, ATPTPKIS1, DSP4 STARCH-EXCESS 4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, dual specificity protein phosphatase (DsPTP1) family protein (.1), dual specificity protein phosphatase (DsPTP1) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008779 [exp] 992 / 0 AT3G01510 703 / 0.0 like SEX4 1 (.1) Lus10034214 [exp] 115 / 1e-28 AT3G10940 405 / 5e-144 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1) Lus10029052 [exp] 113 / 7e-28 AT3G10940 394 / 2e-139 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1) Lus10038652 [exp] 100 / 7e-23 AT3G52180 456 / 8e-161 STARCH-EXCESS 4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, dual specificity protein phosphatase (DsPTP1) family protein (.1), dual specificity protein phosphatase (DsPTP1) family protein (.2) Lus10037924 [exp] 100 / 9e-23 AT3G52180 464 / 2e-163 STARCH-EXCESS 4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, dual specificity protein phosphatase (DsPTP1) family protein (.1), dual specificity protein phosphatase (DsPTP1) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G349000 [exp] 592 / 0 AT3G01510 775 / 0.0 like SEX4 1 (.1) Potri.019G048600 [exp] 114 / 2e-28 AT3G10940 417 / 2e-148 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1) Potri.008G029300 [exp] 100 / 1e-22 AT3G52180 461 / 1e-162 STARCH-EXCESS 4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, dual specificity protein phosphatase (DsPTP1) family protein (.1), dual specificity protein phosphatase (DsPTP1) family protein (.2) Potri.010G232200 [exp] 95 / 7e-21 AT3G52180 459 / 5e-162 STARCH-EXCESS 4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, dual specificity protein phosphatase (DsPTP1) family protein (.1), dual specificity protein phosphatase (DsPTP1) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00782 [flax] [poplar] DSPc Dual specificity phosphatase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10022236 pacid=23139462 polypeptide=Lus10022236 locus=Lus10022236.g ID=Lus10022236.BGIv1.0 annot-version=v1.0 ATGGCTTCTCTTCAGTTAGCCGGATGCAGCACCGGTGGTACAGCCTTCCGTCAGCGCACTCTTTCGTACGTTCCGTTCCCCTGCAGAGATCTGAGCTCGT TTCGCCTGAAAAAGGACTATCGTATCCATTTCCTATTCGGTTCCGAAAGAGCGAGGAGAAGAGACGGCAGGATTCGCGCAATGTCGGCCACTAACGGAGC TTCATCTTCATCTGTCATGCATCTGAGCGAGTACATGGTCACTCTCGACAGGCCTCTCGGCATTCGCTTCGCCTTGTCCCTGGACGGCAAAATCATCGTT CATTCTCTCAAGAGAGGCGGAAACGCAGAACGGACGAGAATAATAATGGTTGGAGATACATTGAAGAAGGCAGGCGGCTCCTCTGGCTCGCTTATGGTGA TCACTGATATTGGTGCTGCACGGAAGGTGTTGCTCGAGGATGTTGATTCCAATAGACAATTGACTCTGGTCCTAGAGAGGCCAACATTTCCTTTTCCGAT TCACCTACTTGACTTCTCTAGCGATATTGGAAGCTTTAACAGAGGACGGGTCGCCATGGTGACTTGGAACAAATCTATGCTAGCACCACATCTTCAAAGC AATGAGGAAAGTGGGAATTCTGGATTTGTAGCATTTTCATGGAACTTATTAACACATCATGGGTGGAAGCTTTTGAATGATCGTACTGGAAGGGCAGAAC CTGCAGAATATAGGTATAAAACTCAAGTTGTCAGCCTTTTGTCTGAAGATGTGTCGGGAGATGGAGAATGGGCTCATGGAAACTTCCCTCTCGAAGAGTA CATTGGTGCACTAGAACGTTCGAAAGATGAATTGTACTATGATCATTCTCTTGGAATGCACTATACTAAGGTCACAAAGCAAATATTTGTGGGATCATGT CTGCAAAAGGAGGAGGATGTGAAAAGATTGTCCAGAGCTCTGTGTCTGCAACAGGGTATCACTGCTGTAATAAATTTCCAAGGTCCTACTGAAGCAGAGA ACTGGGGAATCAATTTAAATTCAATAAATGAATCATGCCAAAGATCTAATATCCTAATGATCAACTATCCAATTAGGGATGTGGATTCGTTTGACTTGAG AAAGAAACTACCCTTTGCTGTTGGTCTCCTGTTTCGCTTGCTGAGAAAAAACCATCATGTTTTGGTAACTTGCACAACTGGTTTTGATCGATCTCCTGCT TGTGTGGTAGCATATCTGCATTGGATTACCGATACATCCCTTCACGCTGCATACAATTATGTCACTGGCTTCCACTTATGCAAGCCTGACAGAGCTGCAA TTGCTTGGGCAACGTGGGATCTTTTTGCTATGGTGGAAAATGGAGTGCATGATGGGCCAGCAACTCATGCTGTAACTTTTGTTTGGACTGGGCAGGAGGG TGAAGATGTGTCCTTGGTTGGAAGTTTTACCGGAAACTGGAAAGAACCAGTTAAGGCAACTCACAAGGGTGGACCAAGATATGAAGTTGAACTGAGGCTA GGACAAGGAAAATCTCTTAGTTCCAAAATGTAG
AA sequence Show only first row Show all	>Lus10022236 pacid=23139462 polypeptide=Lus10022236 locus=Lus10022236.g ID=Lus10022236.BGIv1.0 annot-version=v1.0 MASLQLAGCSTGGTAFRQRTLSYVPFPCRDLSSFRLKKDYRIHFLFGSERARRRDGRIRAMSATNGASSSSVMHLSEYMVTLDRPLGIRFALSLDGKIIV HSLKRGGNAERTRIIMVGDTLKKAGGSSGSLMVITDIGAARKVLLEDVDSNRQLTLVLERPTFPFPIHLLDFSSDIGSFNRGRVAMVTWNKSMLAPHLQS NEESGNSGFVAFSWNLLTHHGWKLLNDRTGRAEPAEYRYKTQVVSLLSEDVSGDGEWAHGNFPLEEYIGALERSKDELYYDHSLGMHYTKVTKQIFVGSC LQKEEDVKRLSRALCLQQGITAVINFQGPTEAENWGINLNSINESCQRSNILMINYPIRDVDSFDLRKKLPFAVGLLFRLLRKNHHVLVTCTTGFDRSPA CVVAYLHWITDTSLHAAYNYVTGFHLCKPDRAAIAWATWDLFAMVENGVHDGPATHAVTFVWTGQEGEDVSLVGSFTGNWKEPVKATHKGGPRYEVELRL GQGKSLSSKM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01510		LSF1	like SEX4 1 (.1)		Lus10022236 [exp]	0	1
AT4G36870	HD	BLH2, SAW1	SAWTOOTH 1, BEL1-like homeodom...		Lus10022485 [exp]	1.4	0.9376
AT3G01510		LSF1	like SEX4 1 (.1)		Lus10008779 [exp]	3.5	0.8971
AT3G24240			Leucine-rich repeat receptor-l...		Lus10018911 [exp]	4.0	0.9149
AT5G48940			Leucine-rich repeat transmembr...		Lus10028612 [exp]	4.5	0.9132
AT3G54100			O-fucosyltransferase family pr...		Lus10035540 [exp]	5.5	0.9289
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10019231 [exp]	5.5	0.9245
AT1G13970			Protein of unknown function (D...		Lus10036799 [exp]	7.3	0.9005
AT3G54100			O-fucosyltransferase family pr...		Lus10027753 [exp]	10.4	0.9125
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10007975 [exp]	10.5	0.8999
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10021412 [exp]	10.6	0.9056

Compare expression of checked genes

Lus10022236 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.