Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18240 494 / 2e-174 Ribosomal protein S24/S35, mitochondrial (.1.2) AT4G21460 486 / 2e-171 Ribosomal protein S24/S35, mitochondrial (.1) AT1G73770 54 / 4e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008778 [exp] 795 / 0 AT3G18240 520 / 0.0 Ribosomal protein S24/S35, mitochondrial (.1.2) Lus10020495 [exp] 279 / 2e-92 AT3G18240 233 / 8e-75 Ribosomal protein S24/S35, mitochondrial (.1.2) Lus10012471 [exp] 175 / 4e-53 AT3G18240 109 / 2e-28 Ribosomal protein S24/S35, mitochondrial (.1.2) Lus10012470 [exp] 0 / 1 AT3G18240 96 / 2e-25 Ribosomal protein S24/S35, mitochondrial (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G044100 [exp] 556 / 0 AT3G18240 461 / 2e-161 Ribosomal protein S24/S35, mitochondrial (.1.2) Potri.012G046000 [exp] 68 / 2e-13 AT1G73770 / unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0337 [flax] [poplar] RF PF10213 [flax] [poplar] MRP-S28 Mitochondrial ribosomal subunit protein
Representative CDS sequence Show only first row Show all	>Lus10022237 pacid=23139384 polypeptide=Lus10022237 locus=Lus10022237.g ID=Lus10022237.BGIv1.0 annot-version=v1.0 ATGCGGCAATCATTGTTGCGAAACTTCACTTGGCGTCTCCTTCATTCTTCTCGCAATGTCGGATCCTCAATCACCAATCCTTCAATCGTCCCGTTGCCGG CTGCTTCTGCTCGTTCCATACTTAGGTTGTACTCGTCCGAGTCCGGCGAGAAGCCCGGCCCTGTCCCCGAGTCATCAGCGTTGGCGCAGGTCCGGAAGGA AGACGAGTCTAGGCAAGTAGAAGACGTGAGTAATAAAGACTTGAAGGAAATGATGGAGAAGTACTTCAAAGGTGAAGAGGACGTGCTTCCTTTAATCATG GAATCAATTCTGCAAAGGAGGTTGTCTGGGAAGCATGAAGAAACTGATGACGAGTTGATGGAGGAACTGCGTATGAAGCCATTGGATGATGTGAAGGACA CAGAGTTCGAATCTGATTTGGAGGAAATGCATGATACAGATGAGGAGATTGATAATTTGTATAGTGCAAGCGATATTGTGATTGATAGAATGCAAAAGGA CGAGTATTTCAACATGGATGATAAGAAGTGGGACGATATGGTTAACGAGGCAATGGAGCATGGCTTCATAAGAGATACCAGAGAATGCGAGGAAATTTTG GAAGACATGCTTAACTGGGACAAGCTTCTTCCAGCTGATGTCAAGGAGAAAGTCGAGAAGAAGTTCAATGAGCTGGGGGATTTGTGTGAAAATGGGGGTC TTGAGCCAGAAGAAGCTTATAAATTGTTTAAAGAATTTGAGGATCAAATAGTATTGGAGTATGGAAATAGAATGGAAGCTGATGGCGCACCACAGTTTGA TGACACAAGTGTGCCTGACAAGAAAAAAGATACAGATGACCCACCAGGTGAGGGGCCAATTCTTAGGTGGACAACTAGGGCGGTCTTTGCCCCCGGTGGT GATGCGTGGCATCCCAAGAACAGGAAAGTCAAGATGTCAGTTACTGTCAAGGAACTTGGCCTTTCAAAGCATCAATATAGGCGGCTAAGAGAACTGGTTG GCAAACGTTATCATCCTGGCAAAGATGAACTTACAATCACTAGTGAGAGGTATGAACACAGAGAAGAAAACAGGAAAGATTGCCTGAGAACTCTCTTCTC AATAATAGAGGAAGCTGGGAAAGCAAACAAATTGGCTGATGACGCTCGAGTATCATATGTCAAGTCCAGACTGAAGGCCAATCCAGCTTTTATGGAAAGG CTGCGTGCCAAGGTTGCAAGCCGAAGTTGTAATGTAGTTAAGGCATGA
AA sequence Show only first row Show all	>Lus10022237 pacid=23139384 polypeptide=Lus10022237 locus=Lus10022237.g ID=Lus10022237.BGIv1.0 annot-version=v1.0 MRQSLLRNFTWRLLHSSRNVGSSITNPSIVPLPAASARSILRLYSSESGEKPGPVPESSALAQVRKEDESRQVEDVSNKDLKEMMEKYFKGEEDVLPLIM ESILQRRLSGKHEETDDELMEELRMKPLDDVKDTEFESDLEEMHDTDEEIDNLYSASDIVIDRMQKDEYFNMDDKKWDDMVNEAMEHGFIRDTRECEEIL EDMLNWDKLLPADVKEKVEKKFNELGDLCENGGLEPEEAYKLFKEFEDQIVLEYGNRMEADGAPQFDDTSVPDKKKDTDDPPGEGPILRWTTRAVFAPGG DAWHPKNRKVKMSVTVKELGLSKHQYRRLRELVGKRYHPGKDELTITSERYEHREENRKDCLRTLFSIIEEAGKANKLADDARVSYVKSRLKANPAFMER LRAKVASRSCNVVKA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18240			Ribosomal protein S24/S35, mit...		Lus10022237 [exp]	0	1
AT3G16780			Ribosomal protein L19e family ...		Lus10023388 [exp]	2.4	0.8124
AT3G48150		CDC23, APC8	anaphase-promoting complex sub...		Lus10004242 [exp]	4.7	0.8052
AT5G20170			RNA polymerase II transcriptio...		Lus10043284 [exp]	6.9	0.8013
AT1G30580			GTP binding (.1)		Lus10023261 [exp]	8.7	0.7576
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Lus10042184 [exp]	10.2	0.7405
AT5G05780		RPN8A, AE3, ATH...	ASYMMETRIC LEAVES ENHANCER 3, ...		Lus10035522 [exp]	11.0	0.7675
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10021844 [exp]	11.7	0.7821
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035214 [exp]	12.8	0.7645
AT5G40340			Tudor/PWWP/MBT superfamily pro...		Lus10014546 [exp]	15.2	0.7874
AT3G06050		PRXIIF, ATPRXII...	peroxiredoxin IIF (.1)		Lus10021932 [exp]	15.9	0.7292

Compare expression of checked genes

Lus10022237 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.