Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27870 1789 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G68710 1563 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G25610 1555 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G26130 1541 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1.2) AT1G13210 1517 / 0 ACA.L autoinhibited Ca2+/ATPase II, autoinhibited Ca2+/ATPase II (.1) AT1G17500 1324 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G72700 1309 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G54280 1289 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G13900 1288 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G59820 943 / 0 ALA3 aminophospholipid ATPase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008776 [exp] 1946 / 0 AT3G27870 1540 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10019152 [exp] 1541 / 0 AT3G25610 1871 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035069 [exp] 1501 / 0 AT3G25610 1783 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035068 [exp] 1382 / 0 AT1G68710 1677 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10006881 [exp] 1322 / 0 AT1G17500 1907 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10037622 [exp] 1321 / 0 AT1G17500 1895 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10008473 [exp] 1316 / 0 AT1G17500 1914 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10006017 [exp] 1246 / 0 AT1G17500 1851 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10013286 [exp] 940 / 0 AT1G59820 2015 / 0.0 aminophospholipid ATPase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G349100 [exp] 1756 / 0 AT3G27870 1687 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.012G058000 [exp] 1603 / 0 AT1G68710 1764 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.008G111200 [exp] 1505 / 0 AT1G68710 1767 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G132700 [exp] 1493 / 0 AT1G68710 1753 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.003G043300 [exp] 1291 / 0 AT1G17500 1891 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G197500 [exp] 1288 / 0 AT1G17500 1902 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G081200 [exp] 1223 / 0 AT1G17500 1461 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G039900 [exp] 947 / 0 AT1G59820 1964 / 0.0 aminophospholipid ATPase 3 (.1) Potri.008G191400 [exp] 946 / 0 AT1G59820 1950 / 0.0 aminophospholipid ATPase 3 (.1) Potri.006G109200 [exp] 677 / 0 AT5G04930 1321 / 0.0 aminophospholipid ATPase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10022238 pacid=23139497 polypeptide=Lus10022238 locus=Lus10022238.g ID=Lus10022238.BGIv1.0 annot-version=v1.0 ATGGGGAGGAGGAGGAAGTTGTTGCGGTTTAGCAAGTTGTATTCTTTTTCATGTTTCAAAGCATCTTTTGAGGATGATCATGCTCAAATTGGGAGGAAAG GTTACTCCAGGGTAGTGTATTGCAATGACCCTGACAGTCCAGAATCAGTTGAGCTTAATTACAAAGGCAATTACGTCTCCACCACCAAATACACGGCCGC TAACTTTATTCCCAAGTCTCTCTTTGAGCAGTTCAGGCGGGTTGCCAACATTTATTTTCTTGTTGTAGCTTGTGTCTCTTTTAGTCCATTGGCACCTTAT AACGCTAAAAGTATTCTTGCACCTCTGGTTGTGGTCATTGGAGCTACCATGGTGAAAGAAGCTGTCGAAGATTGGAGGAGGAGAAAACAGGATGTAGAAG CTAATAATAGAAAGGTGAAAGTGTTGGGTAAGAATTCCAAATTCACACAGACTAGATGGAAGCATCTCCGAGTTGGAGATATTGTTGAAGTGGATAAGGA TCAGTATTTCCCTGCTGATCTTCTTCTGCTCTCTTCGAGCTATGATGATGGAGTTTGCTACGTCGAGACGATGAATTTGGATGGAGAGACTAACTTAAAG TTGAAGCATGCTCTGGAGGTCACTTCCTCGCTGCACGATGAAGGAGGTTTAAAGGAATTCAAGGCTGTGATCAAGTGTGAGGACCCAAATGAGAATCTTT ACTCATTTGTGGGGACACTTCATTACAATAGAAGTCAGTATCCACTTTCACCGCAGCAGATTCTTTTGAGGGATTCAAAGCTTAAGAATACGGAGTATGT ATACGGTGTTGTTATCTTTACCGGGAACGACACTAAGGTGATGCAGAACTCCGTGGATCCTCCTTCTAAGAGGAGCAAAATCGAGAAGACAATGGACAAG ATCATTTATATCCTTTTCAGCGCTCTGATTACTGTATCGTTTATTGGGTCTCTATTTTTCGGTATCGAGACCAGTAGAGATTATGAAGATGGGAAATATA GGAGGTGGTATCTTCAGCCGGATAACAGAAATGCTCTTTATGGTCCTGAAAGAGCACCACTTGCTGCTTTGCTCCACTTCTTAACAGGACTCATGCTGTA TGGATATTTAATACCCATATCACTTTATGTGTCTATTGAAATAGTGAAGGTCTTACAAAGCATCTTCATTAACCAAGATCAGGAAATGTACCATGCGGAA GCTGACAGGCCAGCTCGTGCACGTACTTCTAATTTAAATGAGGAACTTGGGCAGGTTGATACTGTGCTCTCTGACAAGACTGGCACACTGACATGTAATT CAATGGAGTTTGTGAAATGTTCAATTGCTGGGAATCCCTATGGCAGGGGTATGACAGAAGTGGAATGGGCCTTATTGCAGAGAAAAAATGGCAAGCCAGT AGATGTCGGTGACAGGCCGGATGACTCAGGTGCCTCGGGAAAGCCAGTGAAGGGATTTAACTTCAGAGACGAACGCATAATGAATGGACAGTGGATTCAT GAACAATATTCCGACTGTATACGGATGTTCTTTCAAGTATTAGCACTATGCAATACAGCTGTTCCAGAGGAAAACAAAGAGTCTCATGAAATTTCTTATG AAGCTGAATCACCAGACGAGGCAGCCTTTGTCGTAGCTGCTAAGGAGATGGGATTCGAGTTATATGAAAGAACACAAACGACTATATCATTGCATGAGTT GGATCCTGCGTCTGGCAGACGAGTTGATAGAGTATACAAGGTTCTTCATGTTTTGGAATTCAGTAGTTCGCGCAAAAGAATGTCTGTGATCATAAGGAGC ATGGAAAATCAACTGTTACTTCTATCCAAGGGTGCAGACAGCGTGATGTTTGATAGGCTGTCGAAGCATGGGCGCCTATTTGAGGCAGAGACGAAGGAGC ACATAAAAAAATATGCCGAGGCTGGTCTTCGAACCCTGGTCATTGCCTTCCGTAAGCTTGATGAAACTGAGTATGGTAATTGGGAAGCAGAATTTACAAA AGCCAAAACAGCAGAAACGGCAGACCGTGATGTTTTGGTGGATGAGCTCGCTGATAAGATTGAAAAGGATTTAGTTCTGCTTGGCGCTACTGCTGTCGAG GACAAACTGCAAAAAGGGGTTCCAGAATGCATTAACAACCTTTCACAGGCAGGGATTAATATATGGGTCATAACTGGTGATAAGATGGAGACGGCGATAA ATATCGGGTATGCTTGTAGTCTGCTAAGACAAGGAATGAAACAAATCACAATCTCGTTAGACTTGCCAGAGATTGAAGCCTTGGAGAAACAGGGGGATAA AGAGGTCGCTTCTAAGGCTTCTCTGGAAAGTGTAACGAAGCAAATCAACGACGGAAGAGCCCTGTTGAATTCTGCCAAAGGAAGCTCAATGGAGTTTAGT TTAGTGATTGATGGGAAGTCTTTGGGTTATGCCCTTAACGAAAGCCTAGAGAAGTCGTTTCTGGAGCTTGCGCTTGATTGTGCTTCTGTCATATGTTGCA GGTCTACTCCTAAACATAAGGCTCTTGTCACAAGATTGGTAAAAACAAGAACAGGTAAGATAACATTGGCCATTGGTGACGGGGCAAATGATGTAGGTAT GCTTCAGGAAGCTGACATAGGAGTCGGCATAAGTGGTGCTGAAGGAATGCAGGCTGTGATGGCAAGTGATTACTCGATAGCACAATTCCGTTTTCTAGAA CGTTTGTTACTGGTTCATGGTCATTGGTGCTACAGGAGAATAGCTATGATGATTTGTTACTTCTTCTACAAGAACATTGCATTCGGATTTACATTATTTT GGTATGAAGCTTATGCTTCGTTCTCCGGTCAGCCTGCATATAACGACTGGTATATGTCATTCTACAACGTCTTCTTCACATCATTTCCAGTAATCGCACT TGGAGTTTTCGATCAGGATGTTTCCGCTAGGCTTTGCCTTAAGTATCCGGTATTATATCAAGAAGGCGTACAGAACGTCCTCTTCAGCTGGTCCCGTATC CTAGGTTGGATGTGCAATGGAGTCCTGACATCCATTATCATCTTCTTCTTCACCACCAACTCCTTGATCAATCAAGCACTCCGAGAAGATGGGCAAGTAA CCGACTATGCGATCCTGGGAGCAACAATGTACACATGCGTGGTGTGGACAGTAAACTGCCAAATGGCACTCTCCATCAATTACTTCACTTGGATTCAGCA CTTCTTCATCTGGGGAAGCATAGCATTCTGGTACATATTTCTCTTGATCTACGGCTACATTGACCCAACAATATCCACAACAGCTTACATGGTACTCATA GAAGCCTGCATCCCAAGTCCTCTCTATTGGCTCGTAACGCTTCTCGTTGTGGTGTCTGCTCTGCTGCCTTGCTTTGCGTACCGAGCCTTCCAGTCCAGAT TCCGGCCAATGTACCATGACATTATACAGATACGGAGAGCAGAAGGCTCGGAGATTGAAACTTCTTCCGGTGCAGGCGAGTTGCCTACAGACGTTAAGTT AAGAGTGCATCATCTCAAGGAAGGGTTGAGGCAGAGGAACTCGTAA
AA sequence Show only first row Show all	>Lus10022238 pacid=23139497 polypeptide=Lus10022238 locus=Lus10022238.g ID=Lus10022238.BGIv1.0 annot-version=v1.0 MGRRRKLLRFSKLYSFSCFKASFEDDHAQIGRKGYSRVVYCNDPDSPESVELNYKGNYVSTTKYTAANFIPKSLFEQFRRVANIYFLVVACVSFSPLAPY NAKSILAPLVVVIGATMVKEAVEDWRRRKQDVEANNRKVKVLGKNSKFTQTRWKHLRVGDIVEVDKDQYFPADLLLLSSSYDDGVCYVETMNLDGETNLK LKHALEVTSSLHDEGGLKEFKAVIKCEDPNENLYSFVGTLHYNRSQYPLSPQQILLRDSKLKNTEYVYGVVIFTGNDTKVMQNSVDPPSKRSKIEKTMDK IIYILFSALITVSFIGSLFFGIETSRDYEDGKYRRWYLQPDNRNALYGPERAPLAALLHFLTGLMLYGYLIPISLYVSIEIVKVLQSIFINQDQEMYHAE ADRPARARTSNLNEELGQVDTVLSDKTGTLTCNSMEFVKCSIAGNPYGRGMTEVEWALLQRKNGKPVDVGDRPDDSGASGKPVKGFNFRDERIMNGQWIH EQYSDCIRMFFQVLALCNTAVPEENKESHEISYEAESPDEAAFVVAAKEMGFELYERTQTTISLHELDPASGRRVDRVYKVLHVLEFSSSRKRMSVIIRS MENQLLLLSKGADSVMFDRLSKHGRLFEAETKEHIKKYAEAGLRTLVIAFRKLDETEYGNWEAEFTKAKTAETADRDVLVDELADKIEKDLVLLGATAVE DKLQKGVPECINNLSQAGINIWVITGDKMETAINIGYACSLLRQGMKQITISLDLPEIEALEKQGDKEVASKASLESVTKQINDGRALLNSAKGSSMEFS LVIDGKSLGYALNESLEKSFLELALDCASVICCRSTPKHKALVTRLVKTRTGKITLAIGDGANDVGMLQEADIGVGISGAEGMQAVMASDYSIAQFRFLE RLLLVHGHWCYRRIAMMICYFFYKNIAFGFTLFWYEAYASFSGQPAYNDWYMSFYNVFFTSFPVIALGVFDQDVSARLCLKYPVLYQEGVQNVLFSWSRI LGWMCNGVLTSIIIFFFTTNSLINQALREDGQVTDYAILGATMYTCVVWTVNCQMALSINYFTWIQHFFIWGSIAFWYIFLLIYGYIDPTISTTAYMVLI EACIPSPLYWLVTLLVVVSALLPCFAYRAFQSRFRPMYHDIIQIRRAEGSEIETSSGAGELPTDVKLRVHHLKEGLRQRNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27870			ATPase E1-E2 type family prote...		Lus10022238 [exp]	0	1
AT5G57190		PSD2	phosphatidylserine decarboxyla...		Lus10035633 [exp]	2.0	0.9469
AT3G10250			Plant protein 1589 of unknown ...		Lus10031001 [exp]	4.7	0.9428
AT4G26060			Ribosomal protein L18ae family...		Lus10027625 [exp]	15.9	0.9281
AT5G01950			Leucine-rich repeat protein ki...		Lus10003244 [exp]	17.7	0.9233
AT2G46600			Calcium-binding EF-hand family...		Lus10030227 [exp]	20.2	0.9207
AT1G80170			Pectin lyase-like superfamily ...		Lus10026798 [exp]	20.5	0.9071
AT3G59660			C2 domain-containing protein /...		Lus10027067 [exp]	24.3	0.9010
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10035302 [exp]	24.5	0.9168
AT3G23270			Regulator of chromosome conden...		Lus10035397 [exp]	25.3	0.8931
AT3G26935			DHHC-type zinc finger family p...		Lus10016754 [exp]	28.4	0.9175

Compare expression of checked genes

Lus10022238 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.