Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14700 340 / 2e-115 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G23910 145 / 1e-40 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G30470 137 / 1e-37 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 115 / 2e-29 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 104 / 2e-25 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G35420 103 / 6e-25 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT5G58490 102 / 1e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G19440 102 / 2e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G15950 101 / 4e-24 IRX4, ATCCR1, CCR1 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) AT1G09480 101 / 5e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008774 [exp] 385 / 2e-135 AT5G14700 253 / 5e-84 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10008775 [exp] 198 / 6e-62 AT5G14700 71 / 3e-14 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10006885 [exp] 155 / 2e-44 AT2G23910 417 / 8e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10003780 [exp] 147 / 2e-41 AT2G23910 414 / 1e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10020372 [exp] 144 / 2e-40 AT2G23910 226 / 6e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041651 [exp] 123 / 7e-32 AT1G15950 532 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10024068 [exp] 122 / 9e-31 AT1G15950 534 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10030973 [exp] 108 / 1e-26 AT1G15950 457 / 1e-162 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10039595 [exp] 107 / 2e-26 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G349600 [exp] 460 / 5e-163 AT5G14700 372 / 3e-128 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.017G110500 [exp] 219 / 1e-68 AT5G14700 228 / 3e-72 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G105000 [exp] 219 / 1e-68 AT5G14700 213 / 2e-66 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G093700 [exp] 153 / 1e-43 AT2G23910 264 / 1e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G140700 [exp] 152 / 2e-43 AT2G23910 265 / 4e-88 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G079500 [exp] 152 / 2e-43 AT2G23910 261 / 1e-86 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.018G100500 [exp] 134 / 1e-36 AT2G23910 438 / 4e-156 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G178700 [exp] 132 / 1e-35 AT4G30470 416 / 1e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G004500 [exp] 112 / 5e-28 AT2G33590 364 / 2e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057800 [exp] 112 / 6e-28 AT5G19440 435 / 5e-154 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01073 [flax] [poplar] 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family
Representative CDS sequence Show only first row Show all	>Lus10022239 pacid=23139428 polypeptide=Lus10022239 locus=Lus10022239.g ID=Lus10022239.BGIv1.0 annot-version=v1.0 ATGGGATTCATTCCGACGGAGGAGAGCCGCAAGAATGAGATTGAGGATTTCAAACGGATGCTGGTTGCCTGTGCCGGACTCAGCCGAAGGAAAGACCAAG AGGAACTGTTCGGCTTCCGCTCACCAGAATTTGACGACAACGACGACGGTAGTGAAAAGATTGTGTGCGTCACCAGCGGAGTTTCCTTCTTAGGCCTTGC CATCGTCAACCGCCTCCTTATCCGCGGTTACTCTGTCCGAATCCTCGTCGACAACCAAGAGGATGTGGAGAAGTTGAGGGAGGTGGAGAGAAGGCAAAAC AGCAATAGCGGCGTGGTGGCGGTGGAGGCGGTGATGGCGAGTTTGTTTCAAGTGGAGAGATTGAAGGAGGCATTCAGCGGATGCCGCGGCGTCTTCCACA CCGCTGCCTTCGCGGATCCGGCTGGACTTTCCGGTTACACGAAATCCATGGGGGAAATAGAAGTGAAGGCGTCAGAGAACGTGGTGGAGGCATGCTCAGC AACTCCATCAGTGAGGAGCTGTGTGGTGACTTCATCGCTTCTGGCCTGCATTTGGCGAGACAGCACCTTGCAGGATTACCCTTGTGTCATCAACCACAAC TCCTGGAGCGACGAATCATTTTGCAGAGATAAGAGGCTGTGGTATGCATTGGGGAAGCTGAGAGCAGAGAAAGCAGCTTGGAGTAAAGCAAAAGAGAAAG GTGTAAAACTGGCTACTATCTGCCCGGGACTCGTCACTGGTCCTGAATTCTTCGCTAGAAATCCAACATCAACAGTCGCTTACTTAAAAGGAGCACAAGA AATGTTTGCAGATGGGCTGCTAGCAACGGTGGATGTAATGAAGGTGGCAGAAGCACATGTGTGTGTCTATGAAGGGATGAGGAAGACGGCAGGTGGGAGG TACGTATGCTATGACAAGGTGATAGAGAGGGAGGAGGTGGCGGAGAAGCTGGCGGAAGAAGTTGGGATGCCGACGGAGAGGATATGTGGGCAAAGAGGGG AATACATTCCAGCTCCATTCCAGTTATCAAACAGAAAGCTTTCTAACCTCATGTCCACAACACTTCGTACTTGTTACAATCACAGCTGA
AA sequence Show only first row Show all	>Lus10022239 pacid=23139428 polypeptide=Lus10022239 locus=Lus10022239.g ID=Lus10022239.BGIv1.0 annot-version=v1.0 MGFIPTEESRKNEIEDFKRMLVACAGLSRRKDQEELFGFRSPEFDDNDDGSEKIVCVTSGVSFLGLAIVNRLLIRGYSVRILVDNQEDVEKLREVERRQN SNSGVVAVEAVMASLFQVERLKEAFSGCRGVFHTAAFADPAGLSGYTKSMGEIEVKASENVVEACSATPSVRSCVVTSSLLACIWRDSTLQDYPCVINHN SWSDESFCRDKRLWYALGKLRAEKAAWSKAKEKGVKLATICPGLVTGPEFFARNPTSTVAYLKGAQEMFADGLLATVDVMKVAEAHVCVYEGMRKTAGGR YVCYDKVIEREEVAEKLAEEVGMPTERICGQRGEYIPAPFQLSNRKLSNLMSTTLRTCYNHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14700			NAD(P)-binding Rossmann-fold s...		Lus10022239 [exp]	0	1
AT5G47550			Cystatin/monellin superfamily ...		Lus10017567 [exp]	4.9	0.8851
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10015229 [exp]	5.3	0.8817
AT4G38520			Protein phosphatase 2C family ...		Lus10005054 [exp]	7.5	0.8882
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10029146 [exp]	11.3	0.8957
AT5G18650			CHY-type/CTCHY-type/RING-type ...		Lus10033969 [exp]	17.2	0.8634
AT1G79160			unknown protein		Lus10031755 [exp]	20.4	0.8549
AT3G10572		APEM9	ABERRANT PEROXISOME MORPHOLOGY...		Lus10040572 [exp]	20.7	0.8627
AT3G25910			Protein of unknown function (D...		Lus10043292 [exp]	22.2	0.8810
AT5G32450			RNA binding (RRM/RBD/RNP motif...		Lus10010660 [exp]	27.3	0.8311
AT2G35270	AT-hook	GIK, 2-ATH, AHL...	GIANT KILLER, Predicted AT-hoo...		Lus10000519 [exp]	29.2	0.8212

Compare expression of checked genes

Lus10022239 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.