Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40390 744 / 0 RS5, SIP1 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) AT4G01970 458 / 3e-153 RS4, ATSTS raffinose synthase 4, stachyose synthase (.1) AT5G20250 349 / 1e-112 RS6, DIN10 raffinose synthase 6, DARK INDUCIBLE 10, Raffinose synthase family protein (.1.2.3.4) AT3G57520 340 / 9e-109 RS2, ATSIP2 raffinose synthase 2, seed imbibition 2 (.1.2.3) AT1G55740 321 / 8e-102 RS1, ATSIP1 raffinose synthase 1, seed imbibition 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027679 [exp] 709 / 0 AT5G40390 1040 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Lus10008771 [exp] 411 / 5e-144 AT5G40390 339 / 1e-112 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Lus10017516 [exp] 342 / 8e-110 AT5G20250 1145 / 0.0 raffinose synthase 6, DARK INDUCIBLE 10, Raffinose synthase family protein (.1.2.3.4) Lus10007537 [exp] 338 / 3e-108 AT3G57520 1235 / 0.0 raffinose synthase 2, seed imbibition 2 (.1.2.3) Lus10041370 [exp] 69 / 2e-13 AT5G40390 71 / 8e-15 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Lus10039945 [exp] 0 / 1 AT5G40390 164 / 8e-58 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G123400 [exp] 814 / 0 AT5G40390 1147 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Potri.017G036700 [exp] 812 / 0 AT5G40390 1118 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Potri.004G207900 [exp] 806 / 0 AT5G40390 1145 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Potri.T124908 [exp] 723 / 0 AT5G40390 1055 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Potri.014G118400 [exp] 495 / 1e-167 AT4G01970 1087 / 0.0 raffinose synthase 4, stachyose synthase (.1) Potri.002G193700 [exp] 493 / 4e-167 AT4G01970 1040 / 0.0 raffinose synthase 4, stachyose synthase (.1) Potri.011G166700 [exp] 339 / 1e-108 AT1G55740 1154 / 0.0 raffinose synthase 1, seed imbibition 1 (.1) Potri.018G126400 [exp] 332 / 5e-105 AT5G20250 1218 / 0.0 raffinose synthase 6, DARK INDUCIBLE 10, Raffinose synthase family protein (.1.2.3.4) Potri.006G065700 [exp] 332 / 6e-105 AT5G20250 1154 / 0.0 raffinose synthase 6, DARK INDUCIBLE 10, Raffinose synthase family protein (.1.2.3.4) Potri.006G052800 [exp] 316 / 2e-99 AT3G57520 1290 / 0.0 raffinose synthase 2, seed imbibition 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF05691 [flax] [poplar] Raffinose_syn Raffinose synthase or seed imbibition protein Sip1
Representative CDS sequence Show only first row Show all	>Lus10022240 pacid=23139437 polypeptide=Lus10022240 locus=Lus10022240.g ID=Lus10022240.BGIv1.0 annot-version=v1.0 ATGGGAGCGTTCGTTAAGGATCTCAAGGATGAGTTTGGGACCGTTGATTATGTGTACGTGTGGCACGCGCTTTGTGGGTATTGGGGTGGGCTTAGGCCCA ATGTTCCGGGGCTTCCTGGAAGTGTGGTGGTGAAGCCCAAACTGTCTCCCGGTCTGAAAATGACGATGGAGGATCTGGCGGTGGATAAGATAGTGGGAAA CGGCGTCGGATTGGTGCCGCCGGAGCTGGTTGATCAGATGTACGAAGGGATCCACTCGCATCTAGAAAGTGTGGGGATTGACGGCGTCAAAGTGGACGTC ATTCACTTGTTAGAGATGGTGTGCGAGGATTACGGAGGAAGAGTTGACCTGGCAAAGGCATATTTCAAAGCATTGACTGCTTCAGTAAGAAAGCATTTCA ATGGGAATGGGGTAATTGCTAGCATGGAGCATTGCAACGATTTCATGTTCCTTGGTACCGAAGCCATAACTCTCGGCCGTGTTGTGATGGAAGGAACTAA ATGTTATTGGGATTGGGTTCGGGTTGGGCCTGCAGGTGATGATTTCTGGTGTACCGATCCATCCGGAGACCCAAACGGCACATTTTGGCTCCAAGGATGT CATATGGTTCATTGTGCATACAACAGTTTGTGGATGGGAAACTTCATTCACCCTGACTGGGATATGTTTCAGTCAACTCATCCTTGTGCTGAGTTTCATG CTGCTTCTCGTGCCATCTCCGGAGGCCCGATTTACATTAGTGACACCGTTGGCAAGCACAATTTCTCATTGTTGAAGCGTCTAGCGTTGCCTGATGGGTC TATTCTCCGTTGTGAGTACTATGCCCTTCCCACTAGAGACTGCCTCTTTGAGGATCCCTTACATGATGGCAAGACCATGCTCAAAATTTGGAACCTCAAC AAGTTTACTGGAATCATCGGAGCGTTCAACTGTCAAGGTGGAGGGTGGTCTAGAGAAACAAGACGCAATCAATGTGCTTCACAGTTCTCTCACAAGGTCA CCGCCCAAACCAACCCAAATGACATTGAGTGGGCCAGCGGGAAAAGCCCAATATCCATCGAGACAGCCCAAGTCTTCGCCATGTACTTATCCAAGGCCCA TAAGTTGGTGTTGTCCAAGCTTAACGAGAATATTGAGCTCTCATTAGAACCTTTTGAGTATGAGCTAGTCATTGTGTCTCCGGTGACCACATTGGCTGGA AAATCAGTGCAATTTGCGCCAATTGGGCTGGTTAACATGCTAAACGCCGGTGGTGCAATCCAGTCGGTGGTTTACGAGGAAAGCTCGGCAAAAATTGGCG TGAAGGGTGTTGGAGAAATGATGGCATTTGCGTCAGAGAAGCCGACGGTTTGCAAGGTAGATGGTGGAGAGGTTGAGTTCCGTTATGAAGGTTGCTTGGT TACCGTTGAGGTCCCATGGTCCGGTGGTTCTCTAGTTGAATTTTTGTTTTGA
AA sequence Show only first row Show all	>Lus10022240 pacid=23139437 polypeptide=Lus10022240 locus=Lus10022240.g ID=Lus10022240.BGIv1.0 annot-version=v1.0 MGAFVKDLKDEFGTVDYVYVWHALCGYWGGLRPNVPGLPGSVVVKPKLSPGLKMTMEDLAVDKIVGNGVGLVPPELVDQMYEGIHSHLESVGIDGVKVDV IHLLEMVCEDYGGRVDLAKAYFKALTASVRKHFNGNGVIASMEHCNDFMFLGTEAITLGRVVMEGTKCYWDWVRVGPAGDDFWCTDPSGDPNGTFWLQGC HMVHCAYNSLWMGNFIHPDWDMFQSTHPCAEFHAASRAISGGPIYISDTVGKHNFSLLKRLALPDGSILRCEYYALPTRDCLFEDPLHDGKTMLKIWNLN KFTGIIGAFNCQGGGWSRETRRNQCASQFSHKVTAQTNPNDIEWASGKSPISIETAQVFAMYLSKAHKLVLSKLNENIELSLEPFEYELVIVSPVTTLAG KSVQFAPIGLVNMLNAGGAIQSVVYEESSAKIGVKGVGEMMAFASEKPTVCKVDGGEVEFRYEGCLVTVEVPWSGGSLVEFLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Lus10022240 [exp]	0	1
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Lus10022241 [exp]	2.4	0.7888
AT4G16440			ferredoxin hydrogenases (.1)		Lus10039061 [exp]	29.9	0.5972
AT1G76210			Arabidopsis protein of unknown...		Lus10016002 [exp]	99.0	0.4611
AT1G76140			Prolyl oligopeptidase family p...		Lus10019994 [exp]	155.3	0.5083
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10035821 [exp]	159.5	0.4873
AT5G57015		CKL12	casein kinase I-like 12 (.1)		Lus10008472 [exp]	222.4	0.4599

Compare expression of checked genes

Lus10022240 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.