Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40390 339 / 2e-111 RS5, SIP1 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) AT4G01970 231 / 7e-70 RS4, ATSTS raffinose synthase 4, stachyose synthase (.1) AT5G20250 222 / 4e-67 RS6, DIN10 raffinose synthase 6, DARK INDUCIBLE 10, Raffinose synthase family protein (.1.2.3.4) AT3G57520 213 / 5e-65 RS2, ATSIP2 raffinose synthase 2, seed imbibition 2 (.1.2.3) AT1G55740 201 / 2e-59 RS1, ATSIP1 raffinose synthase 1, seed imbibition 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027679 [exp] 329 / 3e-107 AT5G40390 1040 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Lus10017516 [exp] 229 / 1e-69 AT5G20250 1145 / 0.0 raffinose synthase 6, DARK INDUCIBLE 10, Raffinose synthase family protein (.1.2.3.4) Lus10007537 [exp] 211 / 1e-62 AT3G57520 1235 / 0.0 raffinose synthase 2, seed imbibition 2 (.1.2.3) Lus10041370 [exp] 66 / 8e-13 AT5G40390 71 / 8e-15 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Lus10039946 [exp] 0 / 1 AT5G40390 123 / 9e-38 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G123400 [exp] 399 / 9e-135 AT5G40390 1147 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Potri.004G207900 [exp] 389 / 1e-130 AT5G40390 1145 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Potri.017G036700 [exp] 389 / 1e-130 AT5G40390 1118 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Potri.T124908 [exp] 364 / 4e-121 AT5G40390 1055 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Potri.002G193700 [exp] 234 / 4e-71 AT4G01970 1040 / 0.0 raffinose synthase 4, stachyose synthase (.1) Potri.014G118400 [exp] 231 / 8e-70 AT4G01970 1087 / 0.0 raffinose synthase 4, stachyose synthase (.1) Potri.018G126400 [exp] 219 / 3e-65 AT5G20250 1218 / 0.0 raffinose synthase 6, DARK INDUCIBLE 10, Raffinose synthase family protein (.1.2.3.4) Potri.016G002300 [exp] 212 / 5e-63 AT3G57520 758 / 0.0 raffinose synthase 2, seed imbibition 2 (.1.2.3) Potri.006G065700 [exp] 212 / 7e-63 AT5G20250 1154 / 0.0 raffinose synthase 6, DARK INDUCIBLE 10, Raffinose synthase family protein (.1.2.3.4) Potri.011G166700 [exp] 204 / 3e-60 AT1G55740 1154 / 0.0 raffinose synthase 1, seed imbibition 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF05691 [flax] [poplar] Raffinose_syn Raffinose synthase or seed imbibition protein Sip1
Representative CDS sequence Show only first row Show all	>Lus10022241 pacid=23139406 polypeptide=Lus10022241 locus=Lus10022241.g ID=Lus10022241.BGIv1.0 annot-version=v1.0 ATGGCTCCAACATCTCCTCGAAGTTACACGACCAAACCAGTTTCAGAAACTAACCAGCCGCCTTCTGCCATCTCCTTAGACGGAACCAATCTCAAGGCCA ACGGCCACGTCTTCCTCTCAGACGTCCCACACAATATCAAACTCACTCCTTCCCACAAATCAGCATCAGGTGCCTTCCTCGGGTTTGACGCCGACCAAGC CCTCGACCGCCACGTCATCCCCATCGGAAAGCTCAAGAACCTACGCTTCATGAGCATCTTCCGCTTCAAAGTCTGGTGGACCACTCACTGGGTCGGCTCC AACGGCCGAGACCTCGAACACGAGACCCAACTCCTCATCCTCGACACCTCATCATCCACGTCATCCCCATCTGCCCACGGTAGGCCCTACGTCCTCCTCC TCCCTATCTTGGAAGGCCCATTTCGAGCATCCTTCCAGCCTGGACTCAACGACGACGTGGACGTCTGCGTGGAGAGCGGGTCCACAAAGGTCAAAGCCTC CAGCTTTAACCGGGCGGTCTACATTCACGCTGGAGATGACCCTTTTACCCTCGTCAAGGATGCTATGAAGGTCGTCCGGGCCCACTTGGGGACGTTCAAG CTCTTGGAGGAGAAGACGCCACCGGGGATTGTGGATAAGTTCGGGTGGTGTACGTGGGACGCATTCTATCTTACGGTCAACCCTCAGGGAATCTGGGAAG GAGTCAAAGGACTCGTCGACGGAGGATGCCCTCCCGGGATGGTGCTCATCGACGACGGCTGGCAGTCGATAAGCCACGATGAGGATCCGATCACCACTGA AGGGATGAACGGAGAAACCCCCCCGCCGCAGGGGAGCAGATGCCCTGCCGGCTGTTGA
AA sequence Show only first row Show all	>Lus10022241 pacid=23139406 polypeptide=Lus10022241 locus=Lus10022241.g ID=Lus10022241.BGIv1.0 annot-version=v1.0 MAPTSPRSYTTKPVSETNQPPSAISLDGTNLKANGHVFLSDVPHNIKLTPSHKSASGAFLGFDADQALDRHVIPIGKLKNLRFMSIFRFKVWWTTHWVGS NGRDLEHETQLLILDTSSSTSSPSAHGRPYVLLLPILEGPFRASFQPGLNDDVDVCVESGSTKVKASSFNRAVYIHAGDDPFTLVKDAMKVVRAHLGTFK LLEEKTPPGIVDKFGWCTWDAFYLTVNPQGIWEGVKGLVDGGCPPGMVLIDDGWQSISHDEDPITTEGMNGETPPPQGSRCPAGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Lus10022241 [exp]	0	1
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Lus10022240 [exp]	2.4	0.7888
AT5G42390		SPP	stromal processing peptidase, ...		Lus10041263 [exp]	8.2	0.8213
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10043198 [exp]	11.5	0.8241
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10004009 [exp]	15.5	0.8049
ATCG00480		ATCG00480.1, AT...	ATP synthase subunit beta (.1)		Lus10032826 [exp]	23.1	0.7708
ATCG00480		ATCG00480.1, AT...	ATP synthase subunit beta (.1)		Lus10009173 [exp]	26.5	0.7534
AT5G42390		SPP	stromal processing peptidase, ...		Lus10021970 [exp]	27.6	0.8044
ATCG00480		ATCG00480.1, AT...	ATP synthase subunit beta (.1)		Lus10032827 [exp]	28.7	0.7484
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10032543 [exp]	30.1	0.8013
AT1G33170			S-adenosyl-L-methionine-depend...		Lus10017357 [exp]	30.4	0.7430

Compare expression of checked genes

Lus10022241 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.