Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14550 506 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G62305 338 / 1e-114 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G11940 335 / 4e-113 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G73810 185 / 9e-55 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G57270 184 / 2e-54 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2.3) AT1G10280 183 / 5e-54 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G31350 180 / 3e-53 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G68390 176 / 2e-51 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G16170 176 / 5e-51 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G30060 174 / 1e-50 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008770 [exp] 656 / 0 AT5G14550 558 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10035297 [exp] 334 / 9e-113 AT1G11940 371 / 4e-127 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10030027 [exp] 323 / 2e-108 AT1G11940 369 / 1e-126 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10020037 [exp] 322 / 6e-108 AT1G11940 442 / 2e-155 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10015553 [exp] 319 / 1e-106 AT1G11940 437 / 9e-153 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10025464 [exp] 189 / 4e-56 AT2G19160 550 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10026959 [exp] 180 / 8e-53 AT4G31350 490 / 8e-174 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10040972 [exp] 179 / 2e-52 AT1G10280 529 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10013427 [exp] 177 / 9e-52 AT1G10280 528 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G348400 [exp] 544 / 0 AT5G14550 509 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.011G009500 [exp] 341 / 2e-115 AT1G62305 428 / 7e-150 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.002G227000 [exp] 300 / 3e-99 AT1G11940 369 / 7e-126 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045400 [exp] 189 / 2e-56 AT1G68390 390 / 2e-134 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G076600 [exp] 186 / 3e-55 AT2G19160 560 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G097700 [exp] 184 / 8e-55 AT5G16170 452 / 6e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G143900 [exp] 181 / 2e-53 AT2G19160 564 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121900 [exp] 179 / 1e-52 AT5G11730 409 / 1e-141 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121800 [exp] 178 / 2e-52 AT1G68390 399 / 1e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 177 / 7e-52 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10022242 pacid=23139432 polypeptide=Lus10022242 locus=Lus10022242.g ID=Lus10022242.BGIv1.0 annot-version=v1.0 ATGAAGCAGAGGAAGGCAGCGCAGCAGCAGCACCACCACCATCACAAATCTAACTTCAAATGGAGGAGGAAGCTGTTTGCGGCTCTGTTTCTAGGGTTCT GCTTCGGAAGTTTGTTCCTTTTGCAGACTCACTGTAGTCAAATCATAGCGCTCTCCGCTCTCAAAGCGCGGTTTCGTCACGAGCAGCAGCTGCCGAAGAT CGCCTTCCTGTTTATCGCTCGGAATCGACTCCCTCTTGATGTGGTTTGGGATGCGTTTTTCAAGGGTGAGGAGTCGAGATTTTCAATTCTTGTTCACTCC AGGCCTGGTTTCCTATTCAACAAGGCAACAACGAGGTCTGACTATTTCTTGGATCGCCAAGTTAATGATAGCATTCAGGTAGATTGGGGAGAAGCTACCA TGATCGAAGCAGAACGTATTTTACTTAGACATGCACTTGAGGAACCTTCAAATAAGCGCTTTGTTTTCCTCTCAGACAGCTGCATACCACTTTACAACTT CAGCTACACATATGACTATGTCATGTCAACATCAACCAGTTTTGTAGACAGCTTTGCTGATACAAAAGACGGTCGCTATAATCCTAAAATGGGTCCCATC ATTCCAGTACGTAACTGGAGGAAAGGATCTCAGTGGGTTGTTCTGACCAGAAAACACGCCGAGGCTGTAGTGCACGATAGTACCGTCTTTCCTGTTTTCC AAAAACATTGCAGGCGGAAATCGCTTCCCGAGTTCTGGCGGGATCAACCCTTTCCTGCTGATCCATCCAAAGAGCACAACTGTATACCTGATGAACATTA TGTCCAAACATTATTGGCTCAAAAAGGCCTTGAAAGAGAGTTGACAAGAAGATCATTGACACACAGTTCATGGGACCTTTCGTCCTCTAAAGACCCCAAA CGTCGTGGATGGCATCCTCTTACTTATAAGTATTCTGATGCAACTCCGATGCTGTTGCAATCTATAAAGGATATTGATAACATATATTATGAGACTGAAT ACCGAAGAGAGTGGTGCACAAGCAAAGGGAAGCCAAGTACATGCTTCCTTTTTGCAAGAAAGTTCACCCGTCCTGCTGCTCTCCGCCTCCTCAACATGGT AAGTTTGTGA
AA sequence Show only first row Show all	>Lus10022242 pacid=23139432 polypeptide=Lus10022242 locus=Lus10022242.g ID=Lus10022242.BGIv1.0 annot-version=v1.0 MKQRKAAQQQHHHHHKSNFKWRRKLFAALFLGFCFGSLFLLQTHCSQIIALSALKARFRHEQQLPKIAFLFIARNRLPLDVVWDAFFKGEESRFSILVHS RPGFLFNKATTRSDYFLDRQVNDSIQVDWGEATMIEAERILLRHALEEPSNKRFVFLSDSCIPLYNFSYTYDYVMSTSTSFVDSFADTKDGRYNPKMGPI IPVRNWRKGSQWVVLTRKHAEAVVHDSTVFPVFQKHCRRKSLPEFWRDQPFPADPSKEHNCIPDEHYVQTLLAQKGLERELTRRSLTHSSWDLSSSKDPK RRGWHPLTYKYSDATPMLLQSIKDIDNIYYETEYRREWCTSKGKPSTCFLFARKFTRPAALRLLNMVSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14550			Core-2/I-branching beta-1,6-N-...		Lus10022242 [exp]	0	1
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Lus10029245 [exp]	1.7	0.9808
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Lus10007296 [exp]	2.8	0.9780
					Lus10043485 [exp]	3.9	0.9766
AT4G35240			Protein of unknown function (D...		Lus10012276 [exp]	5.7	0.9607
AT2G23360			Plant protein of unknown funct...		Lus10004994 [exp]	6.7	0.9622
AT5G55970			RING/U-box superfamily protein...		Lus10016652 [exp]	6.9	0.9693
AT5G47530			Auxin-responsive family protei...		Lus10002274 [exp]	7.3	0.9488
					Lus10043486 [exp]	7.4	0.9680
AT4G27430		CIP7	COP1-interacting protein 7 (.1...		Lus10043092 [exp]	8.4	0.9416
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Lus10010647 [exp]	8.6	0.9217

Compare expression of checked genes

Lus10022242 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.