Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13080 211 / 1e-60 EST2, ATMRP3, ABCC3 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) AT3G13100 179 / 1e-49 ATMRP7, ABCC7 ATP-binding cassette C7, multidrug resistance-associated protein 7 (.1) AT3G13090 178 / 3e-49 ATMRP8, ATABCC6 ATP-binding cassette C6, multidrug resistance-associated protein 8 (.1) AT3G60160 153 / 1e-40 ATMRP9, ABCC9 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) AT3G60970 150 / 1e-39 ATMRP15, ABCC15 ATP-binding cassette C15, multidrug resistance-associated protein 15 (.1) AT1G04120 145 / 4e-38 ATABCC5, ABCC5, ATMRP5 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) AT2G47800 111 / 2e-26 EST3, ATMRP4, ABCC4 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1) AT3G62700 111 / 2e-26 ATMRP10, ABCC14 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) AT3G59140 111 / 2e-26 ATMRP14, ABCC10 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) AT3G21250 88 / 2e-18 ATMRP6, ABCC8 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030717 [exp] 298 / 1e-98 AT3G13080 568 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Lus10030718 [exp] 305 / 9e-94 AT3G13080 1249 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Lus10030716 [exp] 249 / 1e-75 AT3G13080 1256 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Lus10013201 [exp] 249 / 5e-74 AT3G13080 1498 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Lus10018027 [exp] 166 / 4e-45 AT3G60160 1863 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Lus10042023 [exp] 166 / 4e-45 AT3G60160 1869 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Lus10024965 [exp] 152 / 3e-40 AT1G04120 2176 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Lus10022858 [exp] 152 / 4e-40 AT1G04120 2341 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Lus10023139 [exp] 110 / 5e-26 AT3G62700 1659 / 0.0 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G362300 [exp] 233 / 2e-68 AT3G13080 2008 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.001G362200 [exp] 221 / 5e-64 AT3G13080 1952 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.003G197200 [exp] 218 / 3e-63 AT3G13080 1832 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.T124606 [exp] 218 / 3e-63 AT3G13080 1830 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.003G197100 [exp] 216 / 2e-62 AT3G13080 1842 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.T124406 [exp] 216 / 2e-62 AT3G13080 1847 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.003G198401 [exp] 215 / 5e-62 AT3G13080 1827 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.T125806 [exp] 215 / 6e-62 AT3G13080 1826 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.T124506 [exp] 209 / 6e-60 AT3G13080 1847 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.003G197101 [exp] 206 / 9e-59 AT3G13080 1862 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region
Representative CDS sequence Show only first row Show all	>Lus10022244 pacid=23139414 polypeptide=Lus10022244 locus=Lus10022244.g ID=Lus10022244.BGIv1.0 annot-version=v1.0 ATGGAAGAGCAAGAGCCTCTCTTGGTTCAAGAGTCAAGTTTGAGAAATGGTTTAGAGCCAAATACGTCAAAAGGGGATGTCAGTGTCACCCCTTATTCAT ATGCTGGTGTTTGGGGTATTCTTTCTTTCTCTTGGATCAGTCCTCTGATTGCTCTTGGCCATAACAAAGCTTTAGACCTTGATGATATTCCTCAGCTTTA TAAAGATGATAGTGTTGTTGGGGCTTTCTCATCCCTTAAGACCAAAATCGATGGGGGATCGGTCAAAGATATTACAGCTTTCAAACTTGTCAAGGCATTG TTCTTGACAGCTTGGAAAGAGATTCTGTTGACAGGTTTTCTGGCTTTGTTGCACACTGCAGCGTCCTATGTTGGGCCATTTCTCATTGACGCTTTTGTTC AATGCTTGAGCGGGCAAGGGGAGTACAAGAATCAAGGGTATGTCCTGGCTGTCGTGTTTCTGGTTGGAAAGATTCTTGAGTGTATTTCACAAAGGCAATG GCTCTTTAAGTTGCAGCAAGTCGGTATGAGGATGCGTGCTGCAGTAGTTATAATGATCTACAACAAGGGCTTGACACTTTCGCATGTAATGTTTGAGGGC TTCCAAATTGGGAGCAATTATTGGATGGCTTGGGCAACTCCAGTATCAGAGGATGAAGAGCCTCCTGTTCCTCCAATGACGCTGATAGCTGTATATGTAA TTTTGGCTGTTGCTAGCTCTCTATGCATCCTAGCCAGAACCACACTTCTTGCAGCTATAGCTTACAAAACCGCTACTCTGCTCTTCAACAAGATGCATTT GTGCATCTTCCGTGCTCCCATGTCCTTTTTTGACTCTACTCCTAGTGGAAGAATACTCAATCGTGCTTCTACGGATCAAAGTGCAGTTGATCAACAAATT CCATACCAACTTGGGGCAACTGCATTTTCAATCATCCAGCTTTTGGGAATCATCGCAGTCATGTCTCAGGTGGCTTGGCAAGTTTTTTTTGTATGCATTC CTGTCATTGCTATCAGCATCTGGTATCAGCAATACTATATAACAGCAGCAAGAGAACTTTCAAGGTTGATTGGGAGTTTGCAAAGCTCCGCTAATCCAGC ATTTTGCTGA
AA sequence Show only first row Show all	>Lus10022244 pacid=23139414 polypeptide=Lus10022244 locus=Lus10022244.g ID=Lus10022244.BGIv1.0 annot-version=v1.0 MEEQEPLLVQESSLRNGLEPNTSKGDVSVTPYSYAGVWGILSFSWISPLIALGHNKALDLDDIPQLYKDDSVVGAFSSLKTKIDGGSVKDITAFKLVKAL FLTAWKEILLTGFLALLHTAASYVGPFLIDAFVQCLSGQGEYKNQGYVLAVVFLVGKILECISQRQWLFKLQQVGMRMRAAVVIMIYNKGLTLSHVMFEG FQIGSNYWMAWATPVSEDEEPPVPPMTLIAVYVILAVASSLCILARTTLLAAIAYKTATLLFNKMHLCIFRAPMSFFDSTPSGRILNRASTDQSAVDQQI PYQLGATAFSIIQLLGIIAVMSQVAWQVFFVCIPVIAISIWYQQYYITAARELSRLIGSLQSSANPAFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13090		ATMRP8, ATABCC6	ATP-binding cassette C6, multi...		Lus10022244 [exp]	0	1
AT5G05340			Peroxidase superfamily protein...		Lus10009934 [exp]	7.3	0.7765
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025412 [exp]	12.6	0.7596
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10010530 [exp]	18.5	0.7517
AT5G05340			Peroxidase superfamily protein...		Lus10009933 [exp]	20.4	0.7461
AT3G55050			Protein phosphatase 2C family ...		Lus10015047 [exp]	20.8	0.7346
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10036674 [exp]	24.2	0.7543
AT1G27040			Major facilitator superfamily ...		Lus10002793 [exp]	25.9	0.7369
AT1G76130		ATAMY2, AMY2	ARABIDOPSIS THALIANA ALPHA-AMY...		Lus10021836 [exp]	30.6	0.7384
AT2G36780			UDP-Glycosyltransferase superf...		Lus10014402 [exp]	33.8	0.7180
AT5G20480		EFR	EF-TU receptor (.1)		Lus10026938 [exp]	35.6	0.7144

Compare expression of checked genes

Lus10022244 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.