Plant FIBer expression Database

Lus10022245 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G50170 238 / 1e-80 ATSIRB sirohydrochlorin ferrochelatase B (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008769
[exp]
283 / 1e-96 AT1G50170 261 / 8e-87 sirohydrochlorin ferrochelatase B (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G178800
[exp]
250 / 2e-85 AT1G50170 253 / 7e-86 sirohydrochlorin ferrochelatase B (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0043 Chelatase PF01903 CbiX CbiX
Representative CDS sequence
>Lus10022245 pacid=23139483 polypeptide=Lus10022245 locus=Lus10022245.g ID=Lus10022245.BGIv1.0 annot-version=v1.0
ATGAGCCTGAGTTCTTCCAACGGCGGATTAGGGAAGAGCCTTCATGGGATTGGAGATGACGACGGCGTCATCATTGTCGACCATGGGTCCCGGCGGAAGG
AATCTAATCTCATGCTAAATGAATTCGTGGCTATGTTTAAGGATAAAACTGGATACCCAATTGTGGAGCCAGCTCATATGGAGTTGGCAGAACCCTCAAT
AAAAGATGCATTTGGTATGTGTGTTCAAAAAGGTGCAAAGCGTGTTGTTGTCAGCCCATTCTTCCTTTTCCCAGGACGCCATTGGCACCAGGATATTCCT
TCATTAACTGCTGAAGCTGCAAAAGAGCACCCGGGTGTCTCATATCTCATAACCGCACCTCTTGGGTTGCACGAGCTGCTTGTGGATGTCGTGAATGATA
GGATCAGATACTGTTTAAGTCATGTCTCTGGAGATGTCGATGAATGTGAAGTTTGTGTTGGTACGAACAAGTGCAAGCTCAACTCGAACGAGTAG
AA sequence
>Lus10022245 pacid=23139483 polypeptide=Lus10022245 locus=Lus10022245.g ID=Lus10022245.BGIv1.0 annot-version=v1.0
MSLSSSNGGLGKSLHGIGDDDGVIIVDHGSRRKESNLMLNEFVAMFKDKTGYPIVEPAHMELAEPSIKDAFGMCVQKGAKRVVVSPFFLFPGRHWHQDIP
SLTAEAAKEHPGVSYLITAPLGLHELLVDVVNDRIRYCLSHVSGDVDECEVCVGTNKCKLNSNE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G50170 ATSIRB sirohydrochlorin ferrochelatas... Lus10022245
[exp]
0 1
AT2G30410 TFCA, KIS TUBULIN FOLDING FACTOR A, tubu... Lus10031323
[exp]
10.4 0.6742
AT1G78790 unknown protein Lus10042781
[exp]
11.2 0.6725
AT2G24830 C3HZnF zinc finger (CCCH-type) family... Lus10026901
[exp]
11.2 0.6880
AT1G77350 unknown protein Lus10018864
[exp]
13.8 0.6785
AT3G61860 ATRSP31, At-RS3... arginine/serine-rich splicing ... Lus10030226
[exp]
19.4 0.6229
AT4G23710 VAG2 ,VATG2 ,VH... vacuolar ATP synthase subunit ... Lus10021301
[exp]
20.0 0.6614
AT1G20650 ASG5 ALTERED SEED GERMINATION 5, Pr... Lus10030741
[exp]
21.1 0.6755
Lus10030382
[exp]
28.4 0.6577
AT3G29130 unknown protein Lus10038450
[exp]
29.5 0.6475
AT3G32930 unknown protein Lus10013750
[exp]
33.2 0.6192

Lus10022245 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.