Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23240 136 / 1e-36 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G42750 88 / 1e-19 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G59610 60 / 3e-10 Chaperone DnaJ-domain superfamily protein (.1.2) AT3G13310 57 / 5e-10 Chaperone DnaJ-domain superfamily protein (.1) AT3G05345 58 / 1e-09 Chaperone DnaJ-domain superfamily protein (.1) AT2G22360 59 / 2e-09 DNAJ heat shock family protein (.1) AT4G39960 57 / 4e-09 Molecular chaperone Hsp40/DnaJ family protein (.1) AT4G09350 56 / 4e-09 NdhT, CRRJ NADH dehydrogenase-like complex T, CHLORORESPIRATORY REDUCTION J, Chaperone DnaJ-domain superfamily protein (.1) AT4G36040 54 / 1e-08 J11 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) AT1G71000 52 / 5e-08 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008768 [exp] 408 / 1e-144 AT5G23240 141 / 6e-39 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10040990 [exp] 133 / 3e-35 AT5G23240 442 / 8e-153 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10020749 [exp] 98 / 4e-23 AT2G42750 455 / 1e-161 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10004485 [exp] 65 / 5e-12 AT3G05345 287 / 2e-98 Chaperone DnaJ-domain superfamily protein (.1) Lus10029916 [exp] 62 / 9e-11 AT3G05345 277 / 2e-94 Chaperone DnaJ-domain superfamily protein (.1) Lus10002355 [exp] 56 / 3e-09 AT4G13830 139 / 2e-41 DNAJ-like 20 (.1.2) Lus10000631 [exp] 57 / 6e-09 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1) Lus10040777 [exp] 56 / 7e-09 AT5G59610 246 / 6e-81 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10023148 [exp] 57 / 8e-09 AT2G22360 675 / 0.0 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G347600 [exp] 302 / 2e-102 AT5G23240 149 / 2e-41 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.007G072600 [exp] 129 / 4e-34 AT5G23240 461 / 4e-160 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.014G143400 [exp] 92 / 3e-21 AT2G42750 416 / 2e-146 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.002G020800 [exp] 61 / 3e-11 AT2G17880 110 / 3e-31 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G020700 [exp] 58 / 4e-10 AT2G17880 108 / 3e-30 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G240700 [exp] 57 / 1e-09 AT2G17880 105 / 2e-29 Chaperone DnaJ-domain superfamily protein (.1) Potri.008G123200 [exp] 57 / 4e-09 AT1G68370 670 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.001G072700 [exp] 56 / 7e-09 AT5G59610 254 / 3e-84 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.005G073900 [exp] 55 / 3e-08 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.010G122300 [exp] 55 / 3e-08 AT1G68370 671 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10022246 pacid=23139370 polypeptide=Lus10022246 locus=Lus10022246.g ID=Lus10022246.BGIv1.0 annot-version=v1.0 ATGGCGATTGTACTACCAATTGATCAGTTCTCGGTGCTGAAATCTACTAGAAACCATAGCCACTTCTTCAGTTCAATCAGCAACAATAATACTAACAGCT CAAGGGAAACAAGAAGAAGGAGAATATCCACAACCATGATCCGAAACTGCAGCACAAGTGTAGGTAATAATACTACAGGGAAAAAGAATCACTATGAGCT GTTGGGGATTTCTGTTGATTCAAGCTCCCGAGAGATCAAAGATGCATACAGGAAGCTGCAGAAGATCTACCATCCTGATATTGCTGGAGACAAGGGCCAT GAGTTTACCCTGAAGCTGAACCATGCCTATAAGGTGCTGATGAGGAAAGATCTCAGGAGACAGTACGATACTTCAATCGGAGAAGTTGGGATTGGGACTT TTGGCAGAAATGGTAACGTCAGTAATGGATACAGCGCTTGGAATGGTCCGTCGAGACCACACGCTCTGTTCGTAGACGAAACTGCTTGCATAGGGTGTGG AGAATGCGCTCACCATGCAAGCAACACATTCGTCATGGACGAAGGACTTGGCTGTGCAAGAGTCAAAGTGCAGTACGGAGACGATGCAGAAAAGATTGAA GTGTCAGTTGATTCATGTCCTGTGAACTGCATCCACTGGGTCGACAGCGAAGACTTGCCATTGCTCGAGTCCTTGATTCGACCGAAACCAAAGGAAGGCT TTGGTGTATTCGGGCAAGGCTGGGAAAGACCAGCTAACGTATTCAAGGCTGCTGATACGTTCAAAAAGCAGTTACAGAAACAGGCAAAAGATCAACAAGA CAACAGACAAGAGCCTGCTGAAGAGGAAACACCTGCTCAAGCAGCCACTAGAGAAGCTGCTAGTATGAATATCAAGGTGAATAGCTTCTCGTCTATATGG AATACGATCAAAGAAACCTTCAAATGA
AA sequence Show only first row Show all	>Lus10022246 pacid=23139370 polypeptide=Lus10022246 locus=Lus10022246.g ID=Lus10022246.BGIv1.0 annot-version=v1.0 MAIVLPIDQFSVLKSTRNHSHFFSSISNNNTNSSRETRRRRISTTMIRNCSTSVGNNTTGKKNHYELLGISVDSSSREIKDAYRKLQKIYHPDIAGDKGH EFTLKLNHAYKVLMRKDLRRQYDTSIGEVGIGTFGRNGNVSNGYSAWNGPSRPHALFVDETACIGCGECAHHASNTFVMDEGLGCARVKVQYGDDAEKIE VSVDSCPVNCIHWVDSEDLPLLESLIRPKPKEGFGVFGQGWERPANVFKAADTFKKQLQKQAKDQQDNRQEPAEEETPAQAATREAASMNIKVNSFSSIW NTIKETFK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10022246 [exp]	0	1
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10008768 [exp]	1.0	0.9386
					Lus10024153 [exp]	1.7	0.9239
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10040990 [exp]	2.0	0.9360
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10040192 [exp]	6.2	0.8566
AT2G39650			Protein of unknown function (D...		Lus10020938 [exp]	6.7	0.8603
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10004201 [exp]	7.7	0.8958
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10039268 [exp]	8.8	0.8785
AT5G20700			Protein of unknown function (D...		Lus10027595 [exp]	10.2	0.8692
AT2G45910			U-box domain-containing protei...		Lus10016557 [exp]	10.5	0.8456
AT1G10350			DNAJ heat shock family protein...		Lus10030803 [exp]	10.9	0.8486

Compare expression of checked genes

Lus10022246 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.