Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022247 pacid=23139467 polypeptide=Lus10022247 locus=Lus10022247.g ID=Lus10022247.BGIv1.0 annot-version=v1.0 ATGGCGCGGCAGGCTGCAAAGCTTCTGAATCCAATCCGGCAACCCATGTCGTTGTTCAGTTCTTGGAAATATTCTTCAATCTCTCAATCCAGGCAGCTAG TTGGTGGCCGGTTAGAGCCGGTGAAGACATTATTAAAGCGATTTGAACCTTCGATAGCACAGCATCGATGCTCTGAGTTCAAGTACAAGTTCATCTCAAC CCTACAAACGTTTCGTTCGCTCAAGTCAGCAGGGAGTGTCGTAGGAATAGCTAGTGCTTCTTTTGTAATCGGCTCAATCGGTAGCTTATCCGCAGTTTCC CACGCCATTCATGGGGAGGGCATTTTGATGGATGATAGTGAATCCTTTGATGCCTCGGATAGGGATGAGTTTGCACACGCTGCTTGGATGGTCATTCGGA AACTGTGGTTGCCTGCTTTCTTTTTTCTCACTTGTGTATGGAACTGGCATAATCCAGTTATGTTTTGCACCAAGGCTGTGCTTTTGCTTCTTGCTACCAG ACCTAGTCCCTTGACGGTCTACCTTTTCGTCAATCAGCTATGTCATCAGTCTGTGCGCCAGCATCCTCAATCCTTTTGGGCAAAGTCCTTGTACGCGAAA AAGGTTGAAGTTCAAGACTACAAGTTGCTCTGTGTTGCAACTGTAGAAGTAAGAGACAAAAAGTTTAGCTTGGTGGGAATCCTTGGAGGTTGGTGGGTTT TGCCATTGTCAGAAGGAGCATTGTCTAGTTTTTGGGAGAGTGCTCTTTACTAA
AA sequence Show only first row Show all	>Lus10022247 pacid=23139467 polypeptide=Lus10022247 locus=Lus10022247.g ID=Lus10022247.BGIv1.0 annot-version=v1.0 MARQAAKLLNPIRQPMSLFSSWKYSSISQSRQLVGGRLEPVKTLLKRFEPSIAQHRCSEFKYKFISTLQTFRSLKSAGSVVGIASASFVIGSIGSLSAVS HAIHGEGILMDDSESFDASDRDEFAHAAWMVIRKLWLPAFFFLTCVWNWHNPVMFCTKAVLLLLATRPSPLTVYLFVNQLCHQSVRQHPQSFWAKSLYAK KVEVQDYKLLCVATVEVRDKKFSLVGILGGWWVLPLSEGALSSFWESALY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10022247 [exp]	0	1
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013075 [exp]	7.5	0.6877
AT4G28450			nucleotide binding;protein bin...		Lus10015673 [exp]	7.6	0.6618
AT2G34930			disease resistance family prot...		Lus10002753 [exp]	11.4	0.5893
AT4G26770			Phosphatidate cytidylyltransfe...		Lus10028636 [exp]	14.7	0.5992
AT4G14145			unknown protein		Lus10040412 [exp]	20.1	0.5996
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10010858 [exp]	21.3	0.6399
AT5G19460		ATNUDT20	nudix hydrolase homolog 20 (.1...		Lus10033086 [exp]	24.9	0.5981
AT4G26770			Phosphatidate cytidylyltransfe...		Lus10018934 [exp]	28.4	0.6178
AT2G36360			Galactose oxidase/kelch repeat...		Lus10034159 [exp]	32.7	0.5686
AT1G75340	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10040585 [exp]	33.0	0.6003

Compare expression of checked genes

Lus10022247 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.