Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50870 325 / 6e-114 UBC27 ubiquitin-conjugating enzyme 27 (.1.2) AT1G78870 138 / 5e-41 UBC35 ,UBC13A UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) AT5G41700 137 / 7e-41 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT1G16890 137 / 2e-40 UBC36 ,UBC13B UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) AT3G08690 133 / 3e-39 ATUBC11, UBC11 ubiquitin-conjugating enzyme 11 (.1.2) AT2G16740 133 / 3e-39 UBC29 ubiquitin-conjugating enzyme 29 (.1) AT1G64230 134 / 4e-39 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT4G27960 132 / 9e-39 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT5G53300 132 / 1e-38 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT5G56150 131 / 2e-38 UBC30 ubiquitin-conjugating enzyme 30 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008766 [exp] 409 / 2e-146 AT5G50870 326 / 1e-114 ubiquitin-conjugating enzyme 27 (.1.2) Lus10017654 [exp] 140 / 1e-41 AT1G16890 311 / 5e-111 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10033611 [exp] 140 / 1e-41 AT1G16890 311 / 5e-111 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10028700 [exp] 136 / 2e-40 AT3G08690 285 / 2e-100 ubiquitin-conjugating enzyme 11 (.1.2) Lus10009422 [exp] 136 / 2e-40 AT3G08690 285 / 2e-100 ubiquitin-conjugating enzyme 11 (.1.2) Lus10014942 [exp] 132 / 1e-38 AT1G64230 301 / 3e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10038827 [exp] 132 / 1e-38 AT1G64230 301 / 3e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10032352 [exp] 132 / 2e-38 AT5G53300 302 / 2e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Lus10014187 [exp] 132 / 2e-38 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G103400 [exp] 366 / 4e-130 AT5G50870 338 / 4e-120 ubiquitin-conjugating enzyme 27 (.1.2) Potri.012G104100 [exp] 363 / 3e-129 AT5G50870 334 / 1e-118 ubiquitin-conjugating enzyme 27 (.1.2) Potri.011G111400 [exp] 138 / 6e-41 AT1G78870 311 / 1e-110 UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) Potri.001G392500 [exp] 137 / 1e-40 AT1G78870 310 / 1e-110 UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) Potri.011G168200 [exp] 135 / 1e-39 AT1G64230 295 / 1e-104 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.001G471200 [exp] 134 / 2e-39 AT1G64230 292 / 2e-103 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.019G131400 [exp] 132 / 7e-39 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.016G138900 [exp] 132 / 9e-39 AT1G64230 304 / 3e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.006G110200 [exp] 132 / 9e-39 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.019G083800 [exp] 132 / 1e-38 AT5G56150 280 / 1e-98 ubiquitin-conjugating enzyme 30 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme CL0214 [flax] [poplar] UBA PF00627 [flax] [poplar] UBA UBA/TS-N domain
Representative CDS sequence Show only first row Show all	>Lus10022248 pacid=23139460 polypeptide=Lus10022248 locus=Lus10022248.g ID=Lus10022248.BGIv1.0 annot-version=v1.0 ATGTTCATCATTGTCTCGTTGTGTTCGCATGTTGAGGGAACTTACTGTTGGACCGTGGATAGTGGATTTGATTGGAATGATGCCCTTCAATTGGATATAT GTTTCGTTCTTCTGCTGTTTCTTCGACTTCTGTTCACTTCTCCTCTACTCTTAGATTTCTCCCAGTTGAGTAGAGTGGTTGCTACTATGATCGACTTCGC TCGAGTTCAGAAGGAGCTCCAAGAATGCAGCAGAGACATTGGAGCTTCCGGCATCAAGGTTTCCCCCAACTCCGACAGCCTAGCTCGCCTCAGTGGCACC ATTCCTGGCCCTATTGGCACTCCTTATGAAGGTGGCTCTTTCCAAATTGACATCTCCCTTCCAGATGGGTACCCGTTCGAGCCTCCTAGAATGAAGTTCG TGACGAAAGTCTGGCACCCAAATATTAGCAGTCAGAGCGGAGCTATTTGCCTTGATATATTGAAAGACCAATGGAGCCCTGCTCTAACTCTGAAGACAGC TCTACTCTCCGTTCAAGCACTGCTCTCTGCTCCTGAGCCTGATGACCCTCAAGATGCAGTAGTAGCACAGCAGTATCTCAAGGATTACCAGACCTTTGTT GGGACAGCTCGCTACTGGACAGAAACTTTTGCTAAGGTCTCATCTCTCGGTGTTGAAGAAAAGGTACAGAAACTTGTTGAAATGGGATTCCCTGAAGCTT TGGTGAGGAGTACACTGGATTCAGTTGGTGGGGACGAGAACTTGGCTCTGGAGAGGCTGTGTTCTTGA
AA sequence Show only first row Show all	>Lus10022248 pacid=23139460 polypeptide=Lus10022248 locus=Lus10022248.g ID=Lus10022248.BGIv1.0 annot-version=v1.0 MFIIVSLCSHVEGTYCWTVDSGFDWNDALQLDICFVLLLFLRLLFTSPLLLDFSQLSRVVATMIDFARVQKELQECSRDIGASGIKVSPNSDSLARLSGT IPGPIGTPYEGGSFQIDISLPDGYPFEPPRMKFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPEPDDPQDAVVAQQYLKDYQTFV GTARYWTETFAKVSSLGVEEKVQKLVEMGFPEALVRSTLDSVGGDENLALERLCS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50870		UBC27	ubiquitin-conjugating enzyme 2...		Lus10022248 [exp]	0	1
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Lus10039715 [exp]	4.2	0.8064
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10042070 [exp]	4.9	0.7988
AT2G44830			Protein kinase superfamily pro...		Lus10042911 [exp]	6.2	0.8188
AT4G34540			NmrA-like negative transcripti...		Lus10023558 [exp]	9.2	0.7421
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10037428 [exp]	12.2	0.7910
AT2G44830			Protein kinase superfamily pro...		Lus10028208 [exp]	13.6	0.7985
AT3G51650			unknown protein		Lus10009097 [exp]	18.1	0.7755
AT5G22280			unknown protein		Lus10034182 [exp]	20.2	0.7312
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Lus10018503 [exp]	23.1	0.7837
AT2G28380		DRB2	dsRNA-binding protein 2 (.1)		Lus10021471 [exp]	24.7	0.7505

Compare expression of checked genes

Lus10022248 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.