Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14580 1182 / 0 polyribonucleotide nucleotidyltransferase, putative (.1) AT3G03710 416 / 4e-130 PDE326, PNP, RIF10 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) AT3G61620 69 / 2e-12 RRP41 3'-5'-exoribonuclease family protein (.1.2) AT4G29060 55 / 3e-07 EMB2726 embryo defective 2726, elongation factor Ts family protein (.1.2) AT4G27490 53 / 3e-07 3'-5'-exoribonuclease family protein (.1) AT5G30510 54 / 4e-07 ARRPS1, RPS1 ribosomal protein S1 (.1) AT3G23700 44 / 0.0006 Nucleic acid-binding proteins superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008763 [exp] 1739 / 0 AT5G14580 1215 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Lus10013636 [exp] 406 / 6e-126 AT3G03710 1148 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Lus10001332 [exp] 349 / 2e-107 AT3G03710 954 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Lus10043229 [exp] 56 / 2e-07 AT4G29060 1035 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2) Lus10011108 [exp] 56 / 2e-07 AT4G29060 1031 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2) Lus10037395 [exp] 54 / 2e-07 AT4G27490 409 / 2e-146 3'-5'-exoribonuclease family protein (.1) Lus10037822 [exp] 54 / 4e-07 AT5G30510 583 / 0.0 ribosomal protein S1 (.1) Lus10017100 [exp] 54 / 4e-07 AT5G30510 590 / 0.0 ribosomal protein S1 (.1) Lus10000255 [exp] 45 / 4e-05 AT3G61620 280 / 4e-97 3'-5'-exoribonuclease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G347900 [exp] 1325 / 0 AT5G14580 1224 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Potri.019G040100 [exp] 415 / 5e-130 AT3G03710 1197 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Potri.013G065700 [exp] 404 / 1e-125 AT3G03710 1205 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Potri.014G094300 [exp] 67 / 8e-12 AT3G61620 379 / 6e-135 3'-5'-exoribonuclease family protein (.1.2) Potri.018G083900 [exp] 56 / 1e-07 AT4G29060 691 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2) Potri.010G150300 [exp] 54 / 3e-07 AT5G30510 575 / 0.0 ribosomal protein S1 (.1) Potri.008G101100 [exp] 53 / 6e-07 AT5G30510 615 / 0.0 ribosomal protein S1 (.1) Potri.014G148500 [exp] 52 / 1e-06 AT3G23700 439 / 2e-153 Nucleic acid-binding proteins superfamily (.1) Potri.009G010600 [exp] 49 / 6e-06 AT4G27490 394 / 3e-140 3'-5'-exoribonuclease family protein (.1) Potri.004G212500 [exp] 49 / 8e-06 AT4G27490 392 / 2e-139 3'-5'-exoribonuclease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF01138 [flax] [poplar] RNase_PH 3' exoribonuclease family, domain 1 CL0329 [flax] [poplar] PF00547 [flax] [poplar] Urease_gamma Urease, gamma subunit CL0329 [flax] [poplar] PF03726 [flax] [poplar] PNPase Polyribonucleotide nucleotidyltransferase, RNA binding domain CL0021 [flax] [poplar] OB PF00575 [flax] [poplar] S1 S1 RNA binding domain CL0021 [flax] [poplar] PF03725 [flax] [poplar] RNase_PH_C 3' exoribonuclease family, domain 2 CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10022250 pacid=23139362 polypeptide=Lus10022250 locus=Lus10022250.g ID=Lus10022250.BGIv1.0 annot-version=v1.0 ATGTCCGCCTTAGCATCCAGGGCCAACCCTCTTCTCAACTCCATACCTTCCTTCCTAACATGGCGGACTCTAGGTTTCCGCACCATCTGCAGCGGCCGCC TCGGCTTCGCGCCGTCCGATTCCAAATCACCCGTCGCCGGAACCAAGGTCTTGGAGTCCTTCACTGAAGAATTCGAGATCGGCTCCAGCTTGATCACTCT CGAAACCGGCAAAATAGCCAGATTCGCTAACGGCGCTGTAGTTTTGGGCACCAGCCAAACCAAAGTGCTTTCCACCGTCGCCTCTTCTAAAGGCGACGCC CTCCGCGATTTCCTACCTCTTACTGTTGATTATCAAGAGAAACAGTTTGCTCAGAGTGTAATTCCAACTACCTTCATGCGAAGGGAAGGTGCTCCCAGAG AACGCGAACTCTTATGTGGCCGTCTTATTGATCGGCCGATTCGTCCGCTCTTCCCTTCCGGATTTTATCACGAAGTTCAGGTAACGGCGAGTGTTCTCTC ATCCGATGGTAAACACGATCCGGATGTGATGGCAGCTAATGCAACATCTGCTGCACTTATGTTATCTGATATACCCTGGGCTGGCCCCATCGGGATGATA CGAATCGGGAGAATTGATGGGAAATTTGTTGTTAATCCCACCATGGATGAGCTCAACTTAAGTGATCTCAACTTAGTTTATGCATGCACAAAGGATAAAA CTTTAATGATAGATGTACAAGCTCGTGAGATCACAGAGAGAGATCTCGAAGCAGGGTTGAGACTGGCTCATCCAGAGGCAGTTAAATACATCGAGCCCCA GATCAGACTGGCTGCAAAAGCTGGAAAACAGAAAAAGGATTATACATTATCTATGTTGTCAGACAAAACAATGGAAAAAGTTGGTACATTGGCAGAAGCA AATATTGAAGCTGTTTTTACTGATCCCTCTTATGGCAAGTTTGAGCGTGGAGAAGCCTTAGAGAAGATCATGCAAGATGTAAAAGAAAAACTAAAAGAAG AAGGTGATGAGGAGAGTTTAAAAGTTCTTCCAAAGGCAATAGATACAGTGAGGAAACAGGTAGTACGGAAGAGAATTCTTGCAGAGGGTTACAGACTTGA TGGAAGACATCTTGATGAAGTGAGACCTATATATTGTGAAGCTGGAAATTTGCCCATTTTACATGGATCTGCTCTTTTTAACCGTGGAGACACTCAGGTT CTTTGTACTGTAACACTAGGAGCACCTCAGGATGCTCAGCGCTTAGATGCTATTGTTGGACCCTCAACGAAGCGTTTCATGCTCCATTATAGTTTTCCAC CATTTTGCATTAACGAAGTTGGTAAACGGACAGGGCTTAACAGACGTGAGGTTGGGCATGGAACCCTAGCAGAAAAGGCTTTACTAGCGGTATTACCTCC AGAAGATGAGTTTATGTATACTGTTCGCATTAATTCTGAAGTTATGGCATCTGATGGGTCAACTTCAATGGCAACTGTTTGTGGAGGCAGTATGGCTTTG ATGGACGCTGGTATCCCTCTAAGAGAGCATGTAGCTGGTGTTTCCGTGGGTCTTGTTAGTCAAGTTGACTCGACGGGGGAAATTAAAGACTACCGTATAT TGACCGATATTTTGGGCCTGGAAGATCATTTGGGGGATATGGATTTCAAAATTGCAGGAACACGGAGTGGTATCACTGCAATTCAGTTGGATATTAAACC AGCTGGAATTCCTTTGGACATAGTTTGTGAGAGTTTGGAGGCTGCACGTAAAGGTCGCGTTCAGATCCTTGAGCACATGGAAAGAGAGATTAATACTCCG CCCGCTAAGGATGATAGGAATGCTCCTCGACTAGCTAGCCTGAAGTATAGCAATGATGCTCTTCGTCGCTTGATTGGACCTCTCGGTGCTATTAGGAAAA AGATTGAAGAGGAAACAGGTGCACGTTTGTCTGTCGGCGATGGAACACTTACCATAGTAGCTAAGAATCAGACCGTGATGGAGAAAGTGCTAGAAAAGGC ATTCCCACGTTCAACACTTAATTTTCTTCCTCAGGTTGATGTCATTATTGGCCGGGAGATTGAAATTGGAGGAATTTACAAGGGCGTCGTAGGTTCAATA AAAGAATATGGTGCATTTGTAGAGTTCGGTGGCGGCCAGCAAGGTCTACTGCATGTTTCTGAATTATCACATGAGCCGGTGATACGAATATCGGATGTTT TATCGGTCGGCCAGCAGATTTCTCTGAAGTGCATAGGACAGGATGTACGTGGCAACATTAAGTTATCTCTTAAAGCAATGTCTCAACGCCCAAAATCAGC GGAGGACAATGACAGTTATGTTGCTGTTAGCAAAGAGACGGCTGATACTCGGTCTTCGACCACCGATTCGTCCACTCAGCTAGATCACAAGTCGGTTCTT GATTTGCTGCCGCAGGCTACAAGTATTGAAAGTCCTACTTCTTCACCAGATTTTCTGATTCGAAGTGCTGTAGAGTGTGACGAAGAGGAAAAAAAATCAG CTTTGCGATCGCAAGGATCTGGAAACACCCCATGGCCATCTGGGGCCTGTTCGGATATTAAGGAAGTGAAAGGCAAGGCTCGTACAATGAAAAAAACGCT GAAACTCGGAACAACAGTAACAGCAAAGGTGCATGAAATTCGTGCTCTTGGCTTGGTACTTGATTTGGGAGGTGGAGTTCGTGGAATGTATCGTTTCGAG GATCAAGGGAAGACAAAATTCGCAGTTGGTGATGAGTTGGTAGTAAGGTGCACGAGTTTTTCGAGCAAGGGGATTCCAGTCATGTCTCTGATGCATTCAT TGGCCTCCAATATCACAGGAGGAAGAAAGACAAGACACCAATCAAGGAGAGCTGATTCCGCCAAGATGAAATCAAGCAAATAA
AA sequence Show only first row Show all	>Lus10022250 pacid=23139362 polypeptide=Lus10022250 locus=Lus10022250.g ID=Lus10022250.BGIv1.0 annot-version=v1.0 MSALASRANPLLNSIPSFLTWRTLGFRTICSGRLGFAPSDSKSPVAGTKVLESFTEEFEIGSSLITLETGKIARFANGAVVLGTSQTKVLSTVASSKGDA LRDFLPLTVDYQEKQFAQSVIPTTFMRREGAPRERELLCGRLIDRPIRPLFPSGFYHEVQVTASVLSSDGKHDPDVMAANATSAALMLSDIPWAGPIGMI RIGRIDGKFVVNPTMDELNLSDLNLVYACTKDKTLMIDVQAREITERDLEAGLRLAHPEAVKYIEPQIRLAAKAGKQKKDYTLSMLSDKTMEKVGTLAEA NIEAVFTDPSYGKFERGEALEKIMQDVKEKLKEEGDEESLKVLPKAIDTVRKQVVRKRILAEGYRLDGRHLDEVRPIYCEAGNLPILHGSALFNRGDTQV LCTVTLGAPQDAQRLDAIVGPSTKRFMLHYSFPPFCINEVGKRTGLNRREVGHGTLAEKALLAVLPPEDEFMYTVRINSEVMASDGSTSMATVCGGSMAL MDAGIPLREHVAGVSVGLVSQVDSTGEIKDYRILTDILGLEDHLGDMDFKIAGTRSGITAIQLDIKPAGIPLDIVCESLEAARKGRVQILEHMEREINTP PAKDDRNAPRLASLKYSNDALRRLIGPLGAIRKKIEEETGARLSVGDGTLTIVAKNQTVMEKVLEKAFPRSTLNFLPQVDVIIGREIEIGGIYKGVVGSI KEYGAFVEFGGGQQGLLHVSELSHEPVIRISDVLSVGQQISLKCIGQDVRGNIKLSLKAMSQRPKSAEDNDSYVAVSKETADTRSSTTDSSTQLDHKSVL DLLPQATSIESPTSSPDFLIRSAVECDEEEKKSALRSQGSGNTPWPSGACSDIKEVKGKARTMKKTLKLGTTVTAKVHEIRALGLVLDLGGGVRGMYRFE DQGKTKFAVGDELVVRCTSFSSKGIPVMSLMHSLASNITGGRKTRHQSRRADSAKMKSSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14580			polyribonucleotide nucleotidyl...		Lus10022250 [exp]	0	1
AT1G25360			Pentatricopeptide repeat (PPR)...		Lus10040577 [exp]	2.6	0.8728
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Lus10031414 [exp]	3.3	0.9013
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Lus10030542 [exp]	3.5	0.8996
AT2G31060		EMB2785	EMBRYO DEFECTIVE 2785, elongat...		Lus10039896 [exp]	6.6	0.8617
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Lus10028574 [exp]	6.8	0.9003
AT2G45030			Translation elongation factor ...		Lus10018604 [exp]	6.9	0.8693
AT1G72440		SWA2, EDA25	SLOW WALKER2, embryo sac devel...		Lus10037444 [exp]	8.4	0.8918
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10006875 [exp]	8.5	0.8593
AT1G72440		SWA2, EDA25	SLOW WALKER2, embryo sac devel...		Lus10013182 [exp]	8.7	0.8983
AT1G16280		SWA3, AtRH36	SLOW WALKER 3, Arabidopsis tha...		Lus10006326 [exp]	8.7	0.8367

Compare expression of checked genes

Lus10022250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.