Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65590 542 / 0 HEXO3, ATHEX1 beta-hexosaminidase 3 (.1) AT3G55260 404 / 3e-134 HEXO1, ATHEX2 beta-hexosaminidase 1 (.1) AT1G05590 146 / 3e-37 HEXO2, ATHEX3 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003292 [exp] 315 / 4e-99 AT3G55260 781 / 0.0 beta-hexosaminidase 1 (.1) Lus10030323 [exp] 306 / 1e-95 AT3G55260 772 / 0.0 beta-hexosaminidase 1 (.1) Lus10013092 [exp] 171 / 3e-49 AT1G65590 81 / 1e-17 beta-hexosaminidase 3 (.1) Lus10030348 [exp] 129 / 2e-31 AT1G05590 748 / 0.0 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1) Lus10007899 [exp] 122 / 3e-29 AT1G05590 746 / 0.0 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1) Lus10036346 [exp] 52 / 3e-07 ND 40 / 4e-04 Lus10009850 [exp] 43 / 0.0002 ND / Lus10025570 [exp] 0 / 1 AT2G31500 768 / 0.0 calcium-dependent protein kinase 24 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G079400 [exp] 566 / 0 AT1G65590 781 / 0.0 beta-hexosaminidase 3 (.1) Potri.010G211000 [exp] 409 / 1e-136 AT3G55260 815 / 0.0 beta-hexosaminidase 1 (.1) Potri.001G232800 [exp] 146 / 3e-37 AT1G05590 796 / 0.0 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1) Potri.001G232600 [exp] 144 / 3e-36 AT1G05590 798 / 0.0 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1) Potri.008G049801 [exp] 81 / 3e-18 AT3G55260 108 / 6e-29 beta-hexosaminidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0546 [flax] [poplar] Hexosaminidase PF02838 [flax] [poplar] Glyco_hydro_20b Glycosyl hydrolase family 20, domain 2 CL0058 [flax] [poplar] Glyco_hydro_tim PF00728 [flax] [poplar] Glyco_hydro_20 Glycosyl hydrolase family 20, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10022251 pacid=23139510 polypeptide=Lus10022251 locus=Lus10022251.g ID=Lus10022251.BGIv1.0 annot-version=v1.0 ATGAAAACGATACAATTGTTATCGCTTTCGCTGCTGATCATCATCGGATCGACGTCAGCTACTACCGCCACTAAATCTGTTGGCGGCGGCGGTGGCCGGA GGCCGGAAGTGATCAAGGTGTGGCCGATGCCGAAACGGATCAGCAGTGGGGAGAAAACGATGTACATGAATCCAGGCAATTTAAAACTAATTGCTTCGCC TTCTACCAAATACACCGATCCGTCGGGGATTCTCAAAGAAGCCTTCTCCAGAATGTTGGGGTTGCTCACGCTCTCTCATACACTGGCAAATGTTCGTTCC TCTTCCTACACGGCGGCTCTGCCTCGTCTCACCGCCATCCGCGTCCTTATTTCCTCTCCAAATGACAAGTTACAGTACGGCATTGACGAATCCTACAACT TAATGGTTCCATCCACTGATAAGTCCGATATTGCACATCTTGAGGCAGCCACAGTTTATGGAGCTCTACACGGCCTCGAGACATTCAGCCAATTATGCCA ATTTGATTTCGCCACAAGAGAGATTCAAATCCAAATGGTTCCATGGATCATCATCGACCAGCCAAGATTTTTGTACAGAGGCCTATTAATCGATACATCT CGACATTACCAACCAATCTCGATGATCAAGAAAATAATCGATTCTATGACATATGCCAAATTGTACGTAGTTCAAATTTGCAGCTATGCTGAGAGACGAG GTGTCCATGTACTGGCAGAAATAGATGTTCCTGGACATACACTTTCCTGGGGAGTCGGGTATCCTTCATTGTGGCCATCAAAAGATTGCCAAGAGCCATT GGATGTCAGTAATGAGTTCACTTTTACAGTAATAGATGGTATTCTTAAAGATTTCAGCAAAATGTTCAAGTTCAAATTTGTCCACCTGGGAGGTGATGAG GTCAACACCGATTACCGAAACACAGGAGGTCAATTGATTGCATTCCATTTGAAGTGTTGCAGGTTAAAAGAACAAAAGATGAACGCATCTGAAGCTTATG AGTATTTCGTCTTGCGTACACAAAAAATAGCTTTGTCCCATGGATTTGACATTATCAACTGGCTTGGTGGAAACGTGGCTCCAAAAGTGGTGGAAGAAGG GTTTAGGTGCATTGTAAGCAATCAAAACAAGTGGTATTTGGACCATTTGGATGCTAAATGGGAGGACTTCTACCTGAATGACCCCCTTGCTAATATCACA AATCCTCAACTCCATAGCTTGGTAATTGGTGGTGAGGTTTGTGTGTGGGGTGAGACCGTTGATATGTCAGATATTCAGCAGACCATTTGGCCTCGTGCCG CCGCTGCCGCCGAAAGGCTATGGACAAGTTATGACAAGATAGCCAAAGATCCAAAGAAAGTGACGACAAGGTTAACACAGTTCAGGTGTCTACTGAATGA AAGAGGAGTTGCTGCTGCTCCATTGGCTGCATTTGGACGAGCACCCCCTCTTGAGCCTGGAGACTCTGTAAGCGCCGATTCATGGCCTCCCCAACAAACC CTAACCGTCCCAACACAAACCCTAAACCGACCTCAACCATCGGCAGCACCAGCATCGCCATGTTTTTTGTTCCAGCAATCACTCATCCCGCCCCGCCACC GACAATCTCAACGTCAACGAGTCTCTCCCCTCTGGCAACAACTCCCCGCAGAGTCAAGCCGCAATCACCGTGGATCAGGCAACGTAACTCAAGGCGAACT CGAGACTGGCCGAATCCTTGGGGTTGCAACGACCGCATCACCTCGATGTGACCTCACAGCGTCGGATCCAATGGAGACGGAAGCCGAAGGACAATTCTCT AAGTCCTCGAAGAAGACCAACCAAGAGGCGACAATACCATCAGTTACAGCCGGTCCTTGA
AA sequence Show only first row Show all	>Lus10022251 pacid=23139510 polypeptide=Lus10022251 locus=Lus10022251.g ID=Lus10022251.BGIv1.0 annot-version=v1.0 MKTIQLLSLSLLIIIGSTSATTATKSVGGGGGRRPEVIKVWPMPKRISSGEKTMYMNPGNLKLIASPSTKYTDPSGILKEAFSRMLGLLTLSHTLANVRS SSYTAALPRLTAIRVLISSPNDKLQYGIDESYNLMVPSTDKSDIAHLEAATVYGALHGLETFSQLCQFDFATREIQIQMVPWIIIDQPRFLYRGLLIDTS RHYQPISMIKKIIDSMTYAKLYVVQICSYAERRGVHVLAEIDVPGHTLSWGVGYPSLWPSKDCQEPLDVSNEFTFTVIDGILKDFSKMFKFKFVHLGGDE VNTDYRNTGGQLIAFHLKCCRLKEQKMNASEAYEYFVLRTQKIALSHGFDIINWLGGNVAPKVVEEGFRCIVSNQNKWYLDHLDAKWEDFYLNDPLANIT NPQLHSLVIGGEVCVWGETVDMSDIQQTIWPRAAAAAERLWTSYDKIAKDPKKVTTRLTQFRCLLNERGVAAAPLAAFGRAPPLEPGDSVSADSWPPQQT LTVPTQTLNRPQPSAAPASPCFLFQQSLIPPRHRQSQRQRVSPLWQQLPAESSRNHRGSGNVTQGELETGRILGVATTASPRCDLTASDPMETEAEGQFS KSSKKTNQEATIPSVTAGP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65590		HEXO3, ATHEX1	beta-hexosaminidase 3 (.1)		Lus10022251 [exp]	0	1
					Lus10033901 [exp]	1.4	0.9811
AT5G52170	HD	HDG7	homeodomain GLABROUS 7 (.1)		Lus10035095 [exp]	2.4	0.9782
AT5G58980			Neutral/alkaline non-lysosomal...		Lus10021829 [exp]	3.5	0.9715
AT1G71530			Protein kinase superfamily pro...		Lus10001470 [exp]	5.7	0.9641
					Lus10019218 [exp]	6.3	0.9200
					Lus10002291 [exp]	7.7	0.9419
					Lus10022993 [exp]	8.4	0.9337
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10042155 [exp]	9.0	0.9270
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10008441 [exp]	9.2	0.9416
					Lus10033900 [exp]	11.5	0.9113

Compare expression of checked genes

Lus10022251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.