Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14590 679 / 0 Isocitrate/isopropylmalate dehydrogenase family protein (.1) AT1G54340 593 / 0 ICDH isocitrate dehydrogenase (.1) AT1G65930 581 / 0 cICDH cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) AT5G03290 49 / 4e-06 IDH-V isocitrate dehydrogenase V (.1) AT3G09810 49 / 7e-06 IDH-VI isocitrate dehydrogenase VI (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010431 [exp] 584 / 0 AT1G54340 747 / 0.0 isocitrate dehydrogenase (.1) Lus10012111 [exp] 583 / 0 AT1G54340 746 / 0.0 isocitrate dehydrogenase (.1) Lus10007380 [exp] 570 / 0 AT1G65930 741 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Lus10020798 [exp] 567 / 0 AT1G65930 744 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Lus10013090 [exp] 559 / 0 AT5G14590 578 / 0.0 Isocitrate/isopropylmalate dehydrogenase family protein (.1) Lus10013806 [exp] 49 / 7e-06 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Lus10002221 [exp] 49 / 9e-06 AT5G03290 648 / 0.0 isocitrate dehydrogenase V (.1) Lus10023192 [exp] 49 / 1e-05 AT5G03290 649 / 0.0 isocitrate dehydrogenase V (.1) Lus10026519 [exp] 48 / 1e-05 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G347800 [exp] 655 / 0 AT5G14590 771 / 0.0 Isocitrate/isopropylmalate dehydrogenase family protein (.1) Potri.010G176000 [exp] 605 / 0 AT1G65930 744 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.004G074900 [exp] 604 / 0 AT1G65930 781 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.017G144541 [exp] 600 / 0 AT1G65930 779 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.008G080500 [exp] 598 / 0 AT1G65930 734 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.006G126700 [exp] 47 / 2e-05 AT5G03290 627 / 0.0 isocitrate dehydrogenase V (.1) Potri.016G091200 [exp] 47 / 3e-05 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0270 [flax] [poplar] Iso_DH PF00180 [flax] [poplar] Iso_dh Isocitrate/isopropylmalate dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10022252 pacid=23139377 polypeptide=Lus10022252 locus=Lus10022252.g ID=Lus10022252.BGIv1.0 annot-version=v1.0 ATGCTAAACGGACTCGCTCCTTCCAGACTCCGACTGGCCGTCATGTCAGGCGCTGCTGCGATGTTGTCGTCTTCCAAGTCTTCTCTGGCCCTGAGGAACC CTAGTTCCTCATTCTCTTCGAGTTCTATGTTCTTCAATGGCAGAGGAAACGGAGGAGCTGGAACCGTCGGGAGAAGTGTCGTTAGTTTCAGCTCTCCGCT AGTTCGCGCCATTTCGCTTCGTTGCTTTGCTTCTGCTTCCAATTCCGATCGAGTTAAAGTTCAAAATCCGATTGTTGAAATGGACGGTGATGAAATGACC AGGATCATCTGGAAAACGATTAAAGATAAGCTTATATTCCCTTATCTGGACTTGGATATCAAGTATTTTGACTTGGGAATAACGAATCGTGATGCTACTG ATGATAAAGTCACCGTAGAAAGTGCCGAAGCCACCCTCAAACTTGTATGTGTTCTACATATAGTAGCTGGTGGTTCTGTAGCTCTAGGAGCGACAGAAAA CGTTGAAGGCTCTAATTCTGCTGAAGGGTTTGAAGTCTACCCTCATCGCACACTTTCCCTTTTCTTTGCAGATGAGACTAGAGTAAAAGAGTTTGGCCTT AAGTCCATGTGGAGGAGTCCTAATGGCACAATTCGCAACATCTTAGATGGTACTGTTTTTCGGGAACCAATTATCTGCCGTAACATCCCAAGAATTGTTG CCGGTTGGAAGAAACCGATATGCATTGGTAGGCATGCCTTTGGTGATCAGTACCGTGCCACTGATGCTGTTATCAAAGGACCTGGAAAGCTGAAAATGGT TTTTGTCCCAGAGGGCGGTGATACCCCGATGGAGCTTGATGTTCATGATTTCAAAGGTCCTGGTGTGGCATTGGCAATGTATAATGTTGATGAGTCTATT CAAGCTTTTGCTGAGTCGTCAATGGCAATGGCGTTTGCAAAGAAATGGCCTCTATACTTGAGTACCAAAAACACAATTCTTAAGAAGTATGATGGCAGGT TTAAGGACATTTTCCAGGAAGTTTACGAGCAGAACTGGAGGAACAAGTTTGAAGAACATTCTATTTGGTATGAGCATCGGCTAATAGATGACATGGTCGC TTATGCGATGAAAAGTGAAGGTGGATATGTCTGGGCATGCAAAAATTATGACGGAGATGTCCAAAGTGATTTACTTGCGCAAGGATTTGGCTCATTGGGT CTTATGACATCTGTGCTGATATCATCTGATGGTAAGACACTAGAAGCTGAGGCAGCTCATGGAACTGTAACCAGGCATTACAGATTACATCAGAAAGGTC AAGAAACCAGCACCAACAGTATTGCTTCGATTTTTGCGTGGTCGCGAGGATTAGAACATAGGGGAAAACTGGATAAGAACGAAAAGCTGCTTGGTTTTGT TCAAAAGTTGGAGGCTTCGTGCATTGAAACAGTGGAATCAGGAAAAATGACCAAGGATCTGGCCATATTGGTTCACGGCTCCAATTCAGGGTTGTGTGTG TGTCTTAATTTTTTAGTAATGATGAGCTTGGCCGTTGATGCTGATATGGTGCAGGGTATCAAGGGAACTTTACTTGAACACAGAGGAGTTTATAGATGCC GTTTCACAGAATCTGGAGTCGAAGCTCCGAAAAGCAGCACCAGTTTGAAGCGTGGAGTCCAGCCAGCTACCGAAAACACTGATCCTTTTGAAGATTCGGA GAATGGGGACTATAGAGTTTCGCACAGAACAAACATTTGCATACTTTGA
AA sequence Show only first row Show all	>Lus10022252 pacid=23139377 polypeptide=Lus10022252 locus=Lus10022252.g ID=Lus10022252.BGIv1.0 annot-version=v1.0 MLNGLAPSRLRLAVMSGAAAMLSSSKSSLALRNPSSSFSSSSMFFNGRGNGGAGTVGRSVVSFSSPLVRAISLRCFASASNSDRVKVQNPIVEMDGDEMT RIIWKTIKDKLIFPYLDLDIKYFDLGITNRDATDDKVTVESAEATLKLVCVLHIVAGGSVALGATENVEGSNSAEGFEVYPHRTLSLFFADETRVKEFGL KSMWRSPNGTIRNILDGTVFREPIICRNIPRIVAGWKKPICIGRHAFGDQYRATDAVIKGPGKLKMVFVPEGGDTPMELDVHDFKGPGVALAMYNVDESI QAFAESSMAMAFAKKWPLYLSTKNTILKKYDGRFKDIFQEVYEQNWRNKFEEHSIWYEHRLIDDMVAYAMKSEGGYVWACKNYDGDVQSDLLAQGFGSLG LMTSVLISSDGKTLEAEAAHGTVTRHYRLHQKGQETSTNSIASIFAWSRGLEHRGKLDKNEKLLGFVQKLEASCIETVESGKMTKDLAILVHGSNSGLCV CLNFLVMMSLAVDADMVQGIKGTLLEHRGVYRCRFTESGVEAPKSSTSLKRGVQPATENTDPFEDSENGDYRVSHRTNICIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14590			Isocitrate/isopropylmalate deh...		Lus10022252 [exp]	0	1
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10015357 [exp]	3.2	0.8822
AT2G37990			ribosome biogenesis regulatory...		Lus10043278 [exp]	5.5	0.8960
AT1G25260			Ribosomal protein L10 family p...		Lus10043280 [exp]	8.5	0.8860
AT3G02080			Ribosomal protein S19e family ...		Lus10032992 [exp]	16.5	0.8837
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10003379 [exp]	16.9	0.8838
AT4G21090		ATMFDX2	ARABIDOPSIS MITOCHONDRIAL FER...		Lus10038832 [exp]	18.8	0.7988
AT4G11120			translation elongation factor ...		Lus10012296 [exp]	22.4	0.8297
AT1G26880			Ribosomal protein L34e superfa...		Lus10030477 [exp]	27.6	0.8647
AT5G27700			Ribosomal protein S21e (.1)		Lus10031494 [exp]	30.7	0.8411
AT1G22780		RPS18A, PFL1, P...	40S RIBOSOMAL PROTEIN S18, POI...		Lus10042603 [exp]	30.8	0.8655

Compare expression of checked genes

Lus10022252 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.