Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14660 334 / 5e-116 DEF2, PDF1B, ATDEF2 peptide deformylase 1B (.1.2) AT1G15390 97 / 1e-23 PDF1A, ATDEF1 peptide deformylase 1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013086 [exp] 445 / 6e-159 AT5G14660 308 / 3e-105 peptide deformylase 1B (.1.2) Lus10023133 [exp] 95 / 1e-22 AT1G15390 328 / 1e-113 peptide deformylase 1A (.1) Lus10011493 [exp] 92 / 9e-22 AT1G15390 328 / 2e-114 peptide deformylase 1A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G346700 [exp] 345 / 3e-120 AT5G14660 337 / 2e-117 peptide deformylase 1B (.1.2) Potri.001G171800 [exp] 92 / 8e-22 AT1G15390 350 / 2e-122 peptide deformylase 1A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01327 [flax] [poplar] Pep_deformylase Polypeptide deformylase
Representative CDS sequence Show only first row Show all	>Lus10022255 pacid=23139350 polypeptide=Lus10022255 locus=Lus10022255.g ID=Lus10022255.BGIv1.0 annot-version=v1.0 ATGGCGTCCTATGCGGCTTCTTTGTGCTCTTATTCTTTGTCTTCCTCGCTCAGGCGAGCTCTCTTCCTTCCCACCCCCCATTCCTGTCAATCGTTTTACG CTTTCTCTTCAGTAGCTTCTCGCTCCATTTCCACTAGTAGCCCCAAACCAACTGTTTGTATGGCGGTTCGCAGCGGACAGACCAAGCGAGGAGGTTCCTC GTTCAAAGAAGACGAACTAGCTACTTCTTCTGATCTTCAATTCGAGGCACCGCTTAAAATTGTGGAGTACCCTGACCCTATATTGAGAAGGAAGAACAAA AGAATAGGTTCGTTTGACGACAACTTGAAGAAATTGGTGGATGAGATGTTTGATATTATGTACAAAACTGATGGCATTGGGCTCTCAGCACCACAAGTTG GGATCAATGTTCAACTTATGGTTTTCAACCCTGCCGGTGAACCTGATGAAGGGGAGGAAATTGTTCTGGTTAATCCAAGAGTTAGTAGGTACTCAAAGAA GAGGGTGCTTTTTGAGGAAGGATGCCTGTCTTTTCCTGGGATATATGCTGATGTAGATAGACCAGAATCTGTGAAGATTGATGCTAAGGATATTACTGGC GCAAAGTTTACTGTGAACTTATCGGAACTTCCTGCCCGGGTTTTCCAGCACGAGTTTGACCATTTAGAGGGGATTCTTTTCTTTGATAGAATGTCAGGAG AAGTACTTGACAGAATTTATGCGCAGCTACAGGCCTTAGAAAAGAAGTATGAAGAGAAAACTGGACTCCCAAGCCCTGAAAAGGTAGAAGCACCAAGGAA ACGAGTCGCTGCTGTGGGCTTTGGAAAGACATGA
AA sequence Show only first row Show all	>Lus10022255 pacid=23139350 polypeptide=Lus10022255 locus=Lus10022255.g ID=Lus10022255.BGIv1.0 annot-version=v1.0 MASYAASLCSYSLSSSLRRALFLPTPHSCQSFYAFSSVASRSISTSSPKPTVCMAVRSGQTKRGGSSFKEDELATSSDLQFEAPLKIVEYPDPILRRKNK RIGSFDDNLKKLVDEMFDIMYKTDGIGLSAPQVGINVQLMVFNPAGEPDEGEEIVLVNPRVSRYSKKRVLFEEGCLSFPGIYADVDRPESVKIDAKDITG AKFTVNLSELPARVFQHEFDHLEGILFFDRMSGEVLDRIYAQLQALEKKYEEKTGLPSPEKVEAPRKRVAAVGFGKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14660		DEF2, PDF1B, AT...	peptide deformylase 1B (.1.2)		Lus10022255 [exp]	0	1
AT3G25480			Rhodanese/Cell cycle control p...		Lus10005853 [exp]	2.4	0.9534
AT2G21385			unknown protein		Lus10028792 [exp]	3.3	0.9486
AT3G60370			FKBP-like peptidyl-prolyl cis-...		Lus10042897 [exp]	3.5	0.9665
AT3G09210		PTAC13	plastid transcriptionally acti...		Lus10035543 [exp]	3.5	0.9563
AT3G04650			FAD/NAD(P)-binding oxidoreduct...		Lus10042542 [exp]	5.4	0.9309
AT3G60810			unknown protein		Lus10030273 [exp]	6.9	0.9207
AT3G18680			Amino acid kinase family prote...		Lus10020884 [exp]	6.9	0.9453
AT3G44890		RP19, RPL9	ribosomal protein L9 (.1)		Lus10041346 [exp]	7.5	0.9588
AT5G53850			haloacid dehalogenase-like hyd...		Lus10041928 [exp]	8.9	0.9501
AT5G44600			S-adenosyl-L-methionine-depend...		Lus10038404 [exp]	9.4	0.9540

Compare expression of checked genes

Lus10022255 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.