Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27820 689 / 0 ATMDAR4 monodehydroascorbate reductase 4 (.1) AT3G52880 441 / 3e-152 ATMDAR1 monodehydroascorbate reductase 1 (.1.2) AT5G03630 423 / 3e-145 ATMDAR2 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) AT3G09940 405 / 5e-138 MDAR2, ATMDAR3, MDHAR MONODEHYDROASCORBATE REDUCTASE 2, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, monodehydroascorbate reductase (.1.2) AT1G63940 343 / 2e-113 MDAR6 monodehydroascorbate reductase 6 (.1.2.3.4) AT3G17240 49 / 8e-06 mtLPD2, LPD2 lipoamide dehydrogenase 2 (.1.2.3) AT1G48030 45 / 0.0001 mtLPD1 mitochondrial lipoamide dehydrogenase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013079 [exp] 875 / 0 AT3G27820 694 / 0.0 monodehydroascorbate reductase 4 (.1) Lus10035593 [exp] 442 / 6e-153 AT3G52880 668 / 0.0 monodehydroascorbate reductase 1 (.1.2) Lus10028763 [exp] 339 / 2e-111 AT1G63940 755 / 0.0 monodehydroascorbate reductase 6 (.1.2.3.4) Lus10008633 [exp] 315 / 2e-103 AT3G52880 493 / 3e-174 monodehydroascorbate reductase 1 (.1.2) Lus10011734 [exp] 47 / 2e-05 AT3G24170 863 / 0.0 glutathione-disulfide reductase (.1.2.3) Lus10000758 [exp] 44 / 0.0002 AT3G24170 776 / 0.0 glutathione-disulfide reductase (.1.2.3) Lus10006731 [exp] 43 / 0.0004 AT1G07180 679 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10020091 [exp] 43 / 0.0006 AT1G07180 674 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10018770 [exp] 42 / 0.0008 AT3G54660 879 / 0.0 glutathione reductase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G346200 [exp] 754 / 0 AT3G27820 723 / 0.0 monodehydroascorbate reductase 4 (.1) Potri.006G114800 [exp] 465 / 5e-162 AT3G52880 708 / 0.0 monodehydroascorbate reductase 1 (.1.2) Potri.001G099600 [exp] 345 / 5e-114 AT1G63940 793 / 0.0 monodehydroascorbate reductase 6 (.1.2.3.4) Potri.003G178200 [exp] 49 / 5e-06 AT3G24170 848 / 0.0 glutathione-disulfide reductase (.1.2.3) Potri.008G100800 [exp] 44 / 0.0003 AT3G17240 868 / 0.0 lipoamide dehydrogenase 2 (.1.2.3) Potri.010G151400 [exp] 43 / 0.0004 AT3G17240 817 / 0.0 lipoamide dehydrogenase 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00070 [flax] [poplar] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10022260 pacid=23139383 polypeptide=Lus10022260 locus=Lus10022260.g ID=Lus10022260.BGIv1.0 annot-version=v1.0 ATGGGAAGAGCATTTGTCTACGTGATTCTGGGAGGAGGGGTGGCAGCTGGGTATGCAGCTCTTGAATTTACAAGGAAAGGCGTCGCACCTGGCGAACTCT GTATCATCTCTGAAGAACCTGTTGCACCTTATGAAAGACCAGCTCTCAGTAAAGGTTATTTACTACCAGAAGCTCCATCAAGGCTTCCATCTTTCCACAC TTGTGTTGGAGCTAATGAGGAGAAATTATCTCCAAAATGGTATAAAGAACATGGGATTGAGTTAGTCCTCGGGACTCGAGTTATATCTGCTGATGTGAGG CGCAAAACATTGCTTACTGCTGCAGGGGAGACTATAAGTTTCAAGATTCTCATTATTGCCACAGGTGCTCGGGCTCTGAAGCTAGAGGAATTTGGTGTTA CCGCATCGGATGCCCAAAATGTGTGTTATTTACGAGATATAGCGGATGCAAATAGGCTTGTCGATGTTGTGGGATCACGAGCTGGTGGGAATGCTGTTGT CATTGGCGGTGGCTACATAGGAATGGAATGTGCAGCATCTTTAGTGATCAATAAGATGAACGTGGCTATGGTTTTCCCAGAAGCACATTGCATGGCGAGG TTGTTTTCACCCAAGATAGCTGGCTATTATGAAGAATACTATGAGTCCAAAGGAGTACAATTCGTCAAAGGCACCGTGTTGTCATCCTTCGATTTTGGTG CTGATGGACAGGTTACAGCTGTGAATCTCAGAGATGGAACTCAGTTACCGGCAGACATGGTTGTGGTGGGAATTGGGATACGACCGAACACAAGTCTATT TGAAGGCCAACTAACTTTGGAGAAGGGTGGGATCAAAACTAATGCAAGAATGCAGACGAGCAACTCCTCGGTGTATGCAGTTGGGGACGTTGCAACATTT CCAGTCAAATTATTTGGAGAAACTCGGAGGCTGGAGCATGTTGACTGTGCCAGGAAGTCAGCAAGGCATGCTGTGGCCGCGATAATGGAGCCCCAGAAGA CGGAGGATTTTGATTACCTGCCGTTTTTCTACTCCAGAGTCTTTGCATTCTCTTGGCAGTTTTACGGAGACAATGCAGGAGAAGTGGTTCACTTCGGGGA CTTCTCGGGGAACAGAATTGGGGGATACTGGGTAAGTAAAGGGCACCTTGTTGGATCATTCCTTGAAGGGGGAACAAAAGAAGAGTATGAAGCCATAGCA ATGGCCACAAAGGCGAAACCGGCAGTTGAAGACTTGGTTGAGCTAGAAAGTCAAGGGTTGGAATTTGCATTAGCAATCAGCAAGAAACCGGTTGAATCTG CCCTGGTTCCTCCTGTTGATGCGAATGCGAATGCTCCCGGCCTGGATGTGGAGAAATCAGTGTATTCTTGGAACGCGGCAGCTGGTGTTGTTGTTGCTGC ATCTGTTGCTGCATTTGCATATTGGTATGGGAGGAGACGTAAGAGGTGGTGA
AA sequence Show only first row Show all	>Lus10022260 pacid=23139383 polypeptide=Lus10022260 locus=Lus10022260.g ID=Lus10022260.BGIv1.0 annot-version=v1.0 MGRAFVYVILGGGVAAGYAALEFTRKGVAPGELCIISEEPVAPYERPALSKGYLLPEAPSRLPSFHTCVGANEEKLSPKWYKEHGIELVLGTRVISADVR RKTLLTAAGETISFKILIIATGARALKLEEFGVTASDAQNVCYLRDIADANRLVDVVGSRAGGNAVVIGGGYIGMECAASLVINKMNVAMVFPEAHCMAR LFSPKIAGYYEEYYESKGVQFVKGTVLSSFDFGADGQVTAVNLRDGTQLPADMVVVGIGIRPNTSLFEGQLTLEKGGIKTNARMQTSNSSVYAVGDVATF PVKLFGETRRLEHVDCARKSARHAVAAIMEPQKTEDFDYLPFFYSRVFAFSWQFYGDNAGEVVHFGDFSGNRIGGYWVSKGHLVGSFLEGGTKEEYEAIA MATKAKPAVEDLVELESQGLEFALAISKKPVESALVPPVDANANAPGLDVEKSVYSWNAAAGVVVAASVAAFAYWYGRRRKRW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27820		ATMDAR4	monodehydroascorbate reductase...		Lus10022260 [exp]	0	1
AT1G43670		FINS1, AtcFBP	FRUCTOSE INSENSITIVE 1, Arabid...		Lus10018885 [exp]	2.0	0.8650
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10012258 [exp]	2.4	0.8767
AT1G43670		FINS1, AtcFBP	FRUCTOSE INSENSITIVE 1, Arabid...		Lus10028580 [exp]	2.4	0.8586
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Lus10033247 [exp]	4.6	0.8236
AT1G44920			unknown protein		Lus10018656 [exp]	5.3	0.8286
AT2G01110		TATC, PGA2, APG...	unfertilized embryo sac 3, TWI...		Lus10007945 [exp]	8.2	0.7827
AT3G25570			Adenosylmethionine decarboxyla...		Lus10019146 [exp]	13.2	0.8244
AT1G01820		PEX11C	peroxin 11c (.1)		Lus10041368 [exp]	16.4	0.8248
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10039120 [exp]	21.2	0.8011
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10036245 [exp]	24.7	0.7773

Compare expression of checked genes

Lus10022260 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.