Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40400 248 / 5e-78 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G64580 120 / 1e-30 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G11690 117 / 1e-29 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G16880 117 / 1e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74580 117 / 2e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 116 / 3e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12620 115 / 9e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 115 / 1e-28 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 115 / 1e-28 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G09680 114 / 1e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013077 [exp] 478 / 1e-167 AT5G40400 587 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022182 [exp] 273 / 4e-93 AT5G40400 155 / 9e-45 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 121 / 9e-31 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038974 [exp] 117 / 2e-29 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027267 [exp] 117 / 2e-29 AT1G74580 813 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013283 [exp] 115 / 8e-29 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10027916 [exp] 115 / 8e-29 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 114 / 4e-28 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 113 / 4e-28 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G071600 [exp] 325 / 7e-108 AT5G40400 634 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 124 / 6e-32 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050180 [exp] 122 / 2e-31 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046100 [exp] 122 / 3e-31 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.001G276500 [exp] 122 / 5e-31 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G117600 [exp] 119 / 1e-30 AT1G12700 330 / 1e-105 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.007G068400 [exp] 118 / 2e-30 AT3G22470 300 / 8e-96 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G105700 [exp] 119 / 4e-30 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G050500 [exp] 118 / 8e-30 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.009G105600 [exp] 118 / 1e-29 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10022262 pacid=23139474 polypeptide=Lus10022262 locus=Lus10022262.g ID=Lus10022262.BGIv1.0 annot-version=v1.0 ATGTATCGGCGGGGTGTGTTACCCGATTTGGTATCGTATACAGCATTGATCAATGGTCTTTGTAAAGAAGGGAAGATGAAAGAAGCTCTGCAGTTCTTCC ACAGGATGGTTCATAGAGGTCTAATTCCGGACGTGGTGGCGTACTACACTTTAATCTGTGGCTACTGCAAAAAGGGAAGGATTCAAGGTAATGGGATCCG TTCTGATAGTTTCACTTGTCGAGTTTTGATTCGAGCCTACGTGGAAGACGGCAGGTTGATTTCGGCTCTGAATTTGGCAGTGGAGCTTGAGAGATTTGGC GCATCAATTTCTTGCGATGTTTATGAGTATTTAATAGTTCGCCTGTGTGAAGAGGATAAGCCGTTTGCAGCGAAGAGTCTATTAGAAAGGAAGTGTAAGG ATGGTTATAAATCAGATATGCTAATCTACGAAAAACTCATCGAGTCTCTGAGCACAGTCAACAGTTTAGCTGATGCATTGCTTCTCAAGTCTGAGATGAT ATGTAATAGGAATGGGAAACCCCCCAGTGTTGCGGCATACAAAGCTCTGATCGCTGGTTTGTGTAGAGCAGGCAGAAGTGCCGAAGCGGAATCTTTGACG GATGAGATGATTGAATCAGGTGTCGTTCCGGATCAAGAAATATGTCCGGCATTGGTATCCGGGTACTGCAAAGAAAGAGCTGTTCGGAAAGCTGAGTCAG TGCTGGAATCATTTGCCAGGGAGTTTGGCATATTGGACAATGAGAATCACAATGAAGTTGCGAGAGTCGTATGCGAAGATGGTGATGCTAGTAAGTTGAT GGAATCTGCAGGATGGGATGTTGAAAGTTGGGTATGCACCCAGTAG
AA sequence Show only first row Show all	>Lus10022262 pacid=23139474 polypeptide=Lus10022262 locus=Lus10022262.g ID=Lus10022262.BGIv1.0 annot-version=v1.0 MYRRGVLPDLVSYTALINGLCKEGKMKEALQFFHRMVHRGLIPDVVAYYTLICGYCKKGRIQGNGIRSDSFTCRVLIRAYVEDGRLISALNLAVELERFG ASISCDVYEYLIVRLCEEDKPFAAKSLLERKCKDGYKSDMLIYEKLIESLSTVNSLADALLLKSEMICNRNGKPPSVAAYKALIAGLCRAGRSAEAESLT DEMIESGVVPDQEICPALVSGYCKERAVRKAESVLESFAREFGILDNENHNEVARVVCEDGDASKLMESAGWDVESWVCTQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40400			Pentatricopeptide repeat (PPR)...		Lus10022262 [exp]	0	1
AT1G64300			Protein kinase family protein ...		Lus10036439 [exp]	8.5	0.6910
AT3G17220		ATPMEI2	pectin methylesterase inhibito...		Lus10017346 [exp]	24.3	0.6558
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10030624 [exp]	25.5	0.6684
AT2G46520			cellular apoptosis susceptibil...		Lus10030434 [exp]	27.1	0.6419
AT4G37100			Pyridoxal phosphate (PLP)-depe...		Lus10000751 [exp]	28.5	0.6871
AT5G39840			ATP-dependent RNA helicase, mi...		Lus10034868 [exp]	29.1	0.6858
AT4G37460		SRFR1	SUPPRESSOR OF RPS4-RLD 1, Tetr...		Lus10014863 [exp]	43.4	0.6737
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Lus10017819 [exp]	49.0	0.6587
AT5G16940			carbon-sulfur lyases (.1.2)		Lus10018517 [exp]	49.0	0.6534
AT1G50920			Nucleolar GTP-binding protein ...		Lus10039110 [exp]	56.6	0.6576

Compare expression of checked genes

Lus10022262 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.