Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27670 1174 / 0 RST1 RESURRECTION1, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010376 [exp] 1415 / 0 AT3G27670 687 / 0.0 RESURRECTION1, ARM repeat superfamily protein (.1) Lus10013076 [exp] 1166 / 0 AT3G27670 557 / 3e-179 RESURRECTION1, ARM repeat superfamily protein (.1) Lus10010375 [exp] 528 / 1e-171 AT3G27670 332 / 6e-101 RESURRECTION1, ARM repeat superfamily protein (.1) Lus10013075 [exp] 500 / 2e-164 AT3G27670 229 / 3e-68 RESURRECTION1, ARM repeat superfamily protein (.1) Lus10010374 [exp] 435 / 2e-139 AT3G27670 183 / 2e-51 RESURRECTION1, ARM repeat superfamily protein (.1) Lus10013074 [exp] 359 / 1e-110 AT3G27670 226 / 6e-65 RESURRECTION1, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G346000 [exp] 1605 / 0 AT3G27670 1757 / 0.0 RESURRECTION1, ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12530 [flax] [poplar] DUF3730 Protein of unknown function (DUF3730)
Representative CDS sequence Show only first row Show all	>Lus10022263 pacid=23139389 polypeptide=Lus10022263 locus=Lus10022263.g ID=Lus10022263.BGIv1.0 annot-version=v1.0 ATGGACGCTTACGCTCCACTACTGGAGAAAACGAAGGTTCCGCAGCCGTCTTTACAGAAACACGCTGTGTGTTCTATCTTCTCGAAGCTCCGCACAGCTC CTAAGTACCTTGACGCTGACTCCGAACCTGGCAGAGAAGCAATCTCCGAATGCCTACTGTCTCGATCCCCTGCAGTTGTTGACCAGGCTGTTCGTGAACT CTGCCGTCTCGTTTCCGATTCGAAATTGGACCTCTCTCATGGCATTGTTGAGCTCCAGTCAGCTCTTGAAGGAACAGAGGACAAGTTCGTTACCTTATTT GTTAAAGGCCTTGGATTTCTAGTTAGGATGGGCTTTGACAGGAGTCATGGCTCCTGGCGGTTCACTTCTTGCGAAAATCATCCGTTTGTTAAGATGTTGC TGTGTAGAAGCCAGGTTCAGTCTGAATTGGTGCAGCAAGTTTTAATGTTCATGGCTAAGGATAGGGGGTTGGGAATGGTTGATGCTTGTGAATTCGTGAG ACCCTTGCTGAACTTTTCAGTACTGAGTTTACCATTTTCAGATTCAGTGTCATCGTCGTTCGCTAGGCGGTTAATATCATCAATGGCATCTTTCTGCTGC TCATTCCCAGATGATGGAATTCCTATTCTCAGGCTATTGGTGGGCGTCCTAAAATTCTTGCCATACGAGACCTCGGATCTGTCAGTTGCTGAGGCTCAGC AGCTAGGACTGGAACTGACCGAAACCATTCTTTCACTGTTGGATCGTTTTCATGAGTGTCATGGCAGCAGTGAACGAATTTTTGCATTGTTGAAGCACCT AGTTGTTGCTCAGAAGGATCTTGGATTGGGATACATGCCAGAATTGTCAGCGACACTCCTCTCTCTCTCTACTATCTTAGCTCAGTCTGAGCTTGAACAT GAACAGCTCTCTCTACTGAAACTCCTCATCTACATTTTTAGGTGGAAAATGGAAAATGCAAATTCAGTATCACCGTTTAAACCTGCTCTAAGTGAAGAAC TCGTTTTTATGTTTCCTGTGCTTAACCTTATGTCATCCTCTTCAAAATCGGTTAAGGCTGCAGCAACTGATTTAATTGGCGTGGTTGAGAATTGTCTAGT GCAATTATTAAAAGCATTAAATCCTAAGCTGTGTGTTGGTTTGAAATTTCCTCATAAGAGCACAGTGGGGACCATCGTGTATAGGCTTTTGCAACATTTA TGGATACAGTTACTGGGCAACGATGCAGTTGATTTGTTGGCTGCAGTCGGTATTATGGATCCTAAACTAGGAGTTGGATTGTTGCTCTTTGTTCTATTTT ACATCAATATTTCTACAAGAACAGATCTCAACTGCCAGAGCATGCTGCCACAAATATTAGCCATGCTTCCATCACTTGCTGCACACAACATGATGGTTCC ACTCATTATTCAAAGTATTATGCCAATGCTTCGGACAGAGGGGAAACAAATGTTGTATGGTACAGGCATCCGCTTGCTTTATCATACCTGGGCAATGAAT GACCGAGCTTTTGTAAGTTTGCAGGCAGCACTTCTTCCAAATGGGTTTTCACAATTCAAGTTGGAGAGAACTACCTGTATCAGTTTAGCTGCTTCTGTCA GGGATGTCTGCGGAAAAAATCCTGATAGGGGTGTTGATCTTATATTGTCCGTCTCGGCTTGCATCGAGAGCCGAGACCCAACTATTCAAGCTCTAGGTTT TCAAGGCCTGGCACATCTTTGTGAAGCTGATGTTGTTGAATTCTATACAGCCTGGGAAATCATTGCCAAGGATGTTCTAAACTATTCCATAGATCCTGTT CTAGCACAAAGTTTATGCTTTCTTCTGAAATGGGGTGCGCTGGATGCGGAATTATATGTGGAAGCTTCAACGAATATCCTGCAAATGTTATGGGCTATTG CTGTCACATCTCCTATGAACAATGTGCAATTATGGACTAAGGCAAGGGCCTCTGCCTTTGAAGCATTAGCCCACTATGAGGTGCTTCATGTGCAAAAGGC TATTCCAAATTTCAAGGAAGAGAACACAAATTTTCTTTTTCGGGAGAGAAATTCTGATGTACTCAGAGCCATGGAAGGACTGGAAGCCAAGATCATTGGA GATGAACACTTAAATCGCCGGAGATTGGTCAAGGAGAAAAGGGTTTCACGTAGTAAAGTTGAGAAGTTGTTGGATGTATTTCCCCGGCTTATCTTCCCTT CAGAGAGAAAAGGCAATGCTAGTCAATTGCCTGGTGCAGCTCTTTTGTTGATGTCGTTTACACCTAAAGATCTGACGAAGCGAGCGCGGCCTAATGTAAC AGTGGATGTCCATGCAAAGTATGAGACTGAACTGGCTGAAATTGCTGCATCTCTTCATCTCTCAAGAAATATTTTTGTTGCACTTCTTTCCCTTGAATCA TGGAAATCCTTCATGTATCATTGGATGAATGCTAATGTTTCCTCTCTTGACGCTAAAGCATCATCTGTCGGAGTAGACAAAAATTGTAAAGCTGCAAATG ATATTTTGAAGAGTGCTATGCAATTAGCAGAAGAATCTTTGCCGAGAGCAGCTGAGAACATGGCACTTGCTATTGGTGCACTTTGTGCGGTATTGCCTGC ATCTGCCCATACTATAAAATCAGCTGCTTCAAAATTTCTGTTGAGTTGGTTATTCCAGCATGAGCATGAACATCGGCAATGGTCGGCTGCAATGTCCCTT GGGCTGATCTCAACTGGTCTGCATGCAACTGATCATAAGCAGAAATTTGAAAACATCAATGGCCTTCTTGAGGTACTGTGCACGAGCAGAAGCACTCTTG TCAAAGGAGCTTGTGGTGTTAGCTTGGGCTTTTCATGTGAAGATCTCTTGACCAGGGGGGATGACTTTGTTAACAAAGAGAAAGAGCACTATAGACTGCA GGAGGTCAACTTACTCTCCAGAATTATTAGTGCATTACTTCTTATGACAAGCCCGCTCAGTGAAGCTTCAAATGATTTTATGGAAGGCTTGTCTGCATAT CCCCCACTTTGCAAGAGCGATTCCAAACTAAATGTGAGTTCTAAATTTTTGGTCAAAGAGTCTGATGAGCTCATGGAGGATGCATGGGGTGTTGCTGGTC TTGTCCTTGGCTTGGGGTTCTGTGTTGGTGCAATGTACAGAGCTGGGGCATATGATGCTGTACGAAAGGTGAAAGACCTTATTCTTTCTTGGATCCCACA CATAGATGTTTCACCGTTAAACCCTAGTTTCCTTAAGGAAGACCAGGAGAAGGTCTTATCAGTAGGATCCTGTCTTGCTCTTCCTAATATTGTAGCTTTC TGCCTGAAAGTAGAAATGATGAATGGCGTTGAGCTAGATCATTTACTTCTTGGATATGAAAAGCTTATTAAGGAACTGTTAGGCGTGAAGAAATCTGGTA CTTTCCATCAAAGCTTATTGGCAGCCTCGTGTATAGGAGCAGGAAGCCTTCTTGCCTGCATTCTGAAGGAAGGCGTACACCCCGTTGACACAGAATATGT GAAACGCCTGCTTGAATTATTTAGAAGTTGTTATACTAATACTTATCCATCTATGGTTAATCTTGGAGGGATGTTTGGAATAGTCAATGCCATGGGAGGA GCAGTTGGGGTTTTGGTTCATGACTTTGACTTTTCTTCTCAAACGAGGAGTGTTTACGAACAGGATTCTTCATGTCTTTTAGGTCCTCTGGTGTCAAGTC CAGCTTGTGAACCAAATGTGACTTCATTGGTGCAAGAAATATTTCTTGTTGCGCAGAACTCAAATGATCTTATGATGCAACAGACTGCAACTTGGGCATT GTCCTTCCTGAGAAATCATTTATGGTCACATGAAGTGAAAAATATTGATTCTACTGGTCAGGGTGATATTGTCGACTCCAGAATAATTTCTCACAGCTTT CTCGATGACAGTTTAGTGGTGAAGCTATCGATGTGGCTTTTGAATTTGAACTATGCCGAGGTTGGGAATGTAACGTTTGTTACAAATGCAGCCACTGTTC TGAGATGCCTATCACGAGCTCCACGGCTGCCAGCTGTAGATTGGGGTAGCATCATTAGGCGCTGCATGAGATATGAGGCTGAAGTTTACAAATCTCTGCC CTCAGATTCAGATATTAATAGGGCAACACTTAGAGAGGAATGCCTGAAATTCGCCATATCTCATGCAAACAAATTTGATCAACTCCTTATTTTTCTTGAT GAACTATCTCTCCTATCTAGGTTCAGGACACTGGAGCTGCGTTTGCAATCATGCCTCCTTATTCATCTGGCTGGCCTGATTAAGGTTTTCTCAGGCTCTC GGCTACTTACCTTATTTGATGATATGATGGAATTCTTTTCTTCAGATTCTTCATACAACATGTGCAGCCTGGATCAGAAAAGTTTTTTGAGGGTATCATG TTGGGAAGGCATATGTGACTGTTTAGATGAAGCTTCCCTCGACTCGCTGCAGTGTATATCTAGTATAGAACGGTGCATGGAGGTTCTGTTTACGCTGCTG CCTCTGTCAGAATTCACTGAGAGTAGTGGTGACTTGTCTAATTCCTTAAAAGAATGGACTGTAGTTGTTAAATGTTTTGCAAAGGCTCGAGGGGCTTGGC TATCAAACTTCCTCCAGGTTCCCTTGGTGAATCTAGTTGAAGGGGAAGGCCAGTACTCCGGAGTCCTAAAGAAGATTCAAGCAAAAGCAAAGCTTGCCAG AATGAGTTCTTTGCCTTTAACTGAGCTCGGAAAACTGAAAACTTACTTATTCAACTTCAACTCAAATGGTGTTTGGCACGTTCTTGTAGAGGTTGTAGCA GCTTTGCAACGGAGAGATGGGAGTGTAAAGAGGCAGTGGCTGATTGATGCGGTGGAAATAAGTTGCGTATCAACCCATCCATCCACGGCACTGAGATTTG TGGGGCTTGTATCTGGTATCTGCTGCAAATACATGCCTCTTTTAACCTTTGACATGTTAACGGTTCTAAGTGATCTACCAGTGACTCTTACGGCTCTCCT GAAGGAGCCCAGTTGGGAATCTATTGCCATATCGGTTACTTGCAGTCTATATGCGTCAACAGAACGAATGTATGAGTGGATTACATCAGGATACAACAGG TCCAGCACTCAGCCTATTGACGAAAGTGAGAAAGAAAACTGTGCCTTGTTATTGCGTACAATCCATTCCACCTGTCTATGTTTGAAAGAGTACCTGCCCC TAGAGAAGCAGCTTCTGCTTGCCAACATGATTATCAACCTTTAA
AA sequence Show only first row Show all	>Lus10022263 pacid=23139389 polypeptide=Lus10022263 locus=Lus10022263.g ID=Lus10022263.BGIv1.0 annot-version=v1.0 MDAYAPLLEKTKVPQPSLQKHAVCSIFSKLRTAPKYLDADSEPGREAISECLLSRSPAVVDQAVRELCRLVSDSKLDLSHGIVELQSALEGTEDKFVTLF VKGLGFLVRMGFDRSHGSWRFTSCENHPFVKMLLCRSQVQSELVQQVLMFMAKDRGLGMVDACEFVRPLLNFSVLSLPFSDSVSSSFARRLISSMASFCC SFPDDGIPILRLLVGVLKFLPYETSDLSVAEAQQLGLELTETILSLLDRFHECHGSSERIFALLKHLVVAQKDLGLGYMPELSATLLSLSTILAQSELEH EQLSLLKLLIYIFRWKMENANSVSPFKPALSEELVFMFPVLNLMSSSSKSVKAAATDLIGVVENCLVQLLKALNPKLCVGLKFPHKSTVGTIVYRLLQHL WIQLLGNDAVDLLAAVGIMDPKLGVGLLLFVLFYINISTRTDLNCQSMLPQILAMLPSLAAHNMMVPLIIQSIMPMLRTEGKQMLYGTGIRLLYHTWAMN DRAFVSLQAALLPNGFSQFKLERTTCISLAASVRDVCGKNPDRGVDLILSVSACIESRDPTIQALGFQGLAHLCEADVVEFYTAWEIIAKDVLNYSIDPV LAQSLCFLLKWGALDAELYVEASTNILQMLWAIAVTSPMNNVQLWTKARASAFEALAHYEVLHVQKAIPNFKEENTNFLFRERNSDVLRAMEGLEAKIIG DEHLNRRRLVKEKRVSRSKVEKLLDVFPRLIFPSERKGNASQLPGAALLLMSFTPKDLTKRARPNVTVDVHAKYETELAEIAASLHLSRNIFVALLSLES WKSFMYHWMNANVSSLDAKASSVGVDKNCKAANDILKSAMQLAEESLPRAAENMALAIGALCAVLPASAHTIKSAASKFLLSWLFQHEHEHRQWSAAMSL GLISTGLHATDHKQKFENINGLLEVLCTSRSTLVKGACGVSLGFSCEDLLTRGDDFVNKEKEHYRLQEVNLLSRIISALLLMTSPLSEASNDFMEGLSAY PPLCKSDSKLNVSSKFLVKESDELMEDAWGVAGLVLGLGFCVGAMYRAGAYDAVRKVKDLILSWIPHIDVSPLNPSFLKEDQEKVLSVGSCLALPNIVAF CLKVEMMNGVELDHLLLGYEKLIKELLGVKKSGTFHQSLLAASCIGAGSLLACILKEGVHPVDTEYVKRLLELFRSCYTNTYPSMVNLGGMFGIVNAMGG AVGVLVHDFDFSSQTRSVYEQDSSCLLGPLVSSPACEPNVTSLVQEIFLVAQNSNDLMMQQTATWALSFLRNHLWSHEVKNIDSTGQGDIVDSRIISHSF LDDSLVVKLSMWLLNLNYAEVGNVTFVTNAATVLRCLSRAPRLPAVDWGSIIRRCMRYEAEVYKSLPSDSDINRATLREECLKFAISHANKFDQLLIFLD ELSLLSRFRTLELRLQSCLLIHLAGLIKVFSGSRLLTLFDDMMEFFSSDSSYNMCSLDQKSFLRVSCWEGICDCLDEASLDSLQCISSIERCMEVLFTLL PLSEFTESSGDLSNSLKEWTVVVKCFAKARGAWLSNFLQVPLVNLVEGEGQYSGVLKKIQAKAKLARMSSLPLTELGKLKTYLFNFNSNGVWHVLVEVVA ALQRRDGSVKRQWLIDAVEISCVSTHPSTALRFVGLVSGICCKYMPLLTFDMLTVLSDLPVTLTALLKEPSWESIAISVTCSLYASTERMYEWITSGYNR SSTQPIDESEKENCALLLRTIHSTCLCLKEYLPLEKQLLLANMIINL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10022263 [exp]	0	1
AT1G65070			DNA mismatch repair protein Mu...		Lus10018187 [exp]	1.0	0.8751
AT2G20050			protein serine/threonine phosp...		Lus10034955 [exp]	2.4	0.8690
AT5G54090			DNA mismatch repair protein Mu...		Lus10032917 [exp]	6.5	0.8615
AT1G27170			transmembrane receptors;ATP bi...		Lus10004911 [exp]	20.1	0.7964
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10033845 [exp]	20.2	0.8591
AT1G16540		ACI2, ABA3, SIR...	SIRTINOL RESISTANT 3, LOW OSMO...		Lus10031190 [exp]	20.8	0.7782
AT2G45700			sterile alpha motif (SAM) doma...		Lus10038078 [exp]	21.4	0.8419
AT3G21480			BRCT domain-containing DNA rep...		Lus10037907 [exp]	22.4	0.8280
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Lus10010121 [exp]	23.9	0.8164
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013074 [exp]	24.5	0.8052

Compare expression of checked genes

Lus10022263 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.