Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40440 828 / 0 ATMKK3 mitogen-activated protein kinase kinase 3 (.1) AT4G29810 230 / 9e-71 MK1, ATMKK2 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) AT5G56580 229 / 1e-70 ANQ1, ATMKK6 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) AT4G26070 208 / 2e-62 NMAPKK, MKK1, ATMEK1, MEK1 MITOGEN ACTIVATED PROTEIN KINASE KINASE 1, MAP kinase/ ERK kinase 1 (.1.2.3) AT1G73500 156 / 2e-43 ATMKK9 MAP kinase kinase 9 (.1) AT3G21220 156 / 5e-43 ATMAP2K_ALPHA, ATMKK5, ATMEK5 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) AT1G18350 155 / 7e-43 ATMKK7, BUD1 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) AT1G51660 153 / 1e-41 ATMKK4, ATMEK4 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) AT1G53570 141 / 7e-36 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT3G15220 140 / 2e-35 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001137 [exp] 830 / 0 AT5G40440 711 / 0.0 mitogen-activated protein kinase kinase 3 (.1) Lus10012938 [exp] 223 / 5e-68 AT5G56580 621 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Lus10027623 [exp] 224 / 6e-68 AT4G29810 520 / 0.0 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Lus10011945 [exp] 223 / 1e-66 AT4G29810 407 / 4e-140 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Lus10034986 [exp] 211 / 3e-63 AT5G56580 605 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Lus10035764 [exp] 146 / 3e-39 AT1G51660 500 / 7e-179 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) Lus10001081 [exp] 136 / 6e-37 AT1G73500 296 / 2e-101 MAP kinase kinase 9 (.1) Lus10002096 [exp] 140 / 7e-35 AT2G13680 1077 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10000829 [exp] 129 / 1e-31 AT1G53570 537 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G345500 [exp] 912 / 0 AT5G40440 851 / 0.0 mitogen-activated protein kinase kinase 3 (.1) Potri.018G050800 [exp] 231 / 4e-71 AT4G29810 540 / 0.0 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Potri.018G068500 [exp] 229 / 2e-70 AT5G56580 588 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Potri.006G146500 [exp] 228 / 4e-70 AT4G29810 495 / 7e-177 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Potri.015G030700 [exp] 154 / 2e-42 AT1G73500 392 / 9e-138 MAP kinase kinase 9 (.1) Potri.010G249300 [exp] 153 / 8e-42 AT3G21220 474 / 1e-168 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.008G009800 [exp] 152 / 2e-41 AT3G21220 474 / 9e-169 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.012G043200 [exp] 140 / 1e-37 AT1G73500 381 / 2e-133 MAP kinase kinase 9 (.1) Potri.005G062500 [exp] 144 / 7e-37 AT1G53570 566 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.008G183700 [exp] 137 / 2e-36 AT1G18350 289 / 5e-97 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10022265 pacid=23139424 polypeptide=Lus10022265 locus=Lus10022265.g ID=Lus10022265.BGIv1.0 annot-version=v1.0 ATGGCTGGCCTGGAGGAGTTGAGAAAGAAGCTTACGCCTTTGTTTGATGCCGAGAAGGGTTTCCCAGCTGGGCCATCTTTGGACCCTAACGATTCTTACA TGCTGTCAGATGGTGGAACAGTTAACTTATTGAGCAGATCATACGGGGTATACAACATAAACGAGCTCGGACTGCACAAAAGCACTTCTTCTCCAATCGG GAACACAGAGCATAGTGAAAAAACGTACAACTGTGCGTCCCATGAAATGAGGATCTATGGTGCCATAGGTAGTGGTGCAAGCAGTGTTGTTCAGAGAGCT ATCCATATTCCAACTCATAAAATTCTTGCTTTGAAGAAAATTAACATTTTCGAAAAGGAGAAGAGACAACAGCTCCTGACAGAGATACGGACACTATGTG AGGCACCATGCTATGAGGGGCTTGTGGAATTCCATGGAGCCTTTTACACTCCTGATTCTGGCCAAATAAGCATAGCTTTGGAATATATGGATGGAGGATC ACTGGCAGATATCTTGCGATTGCGGAAAACCATTCCAGAACCAGTGCTTTCATTTATGTTTCAAAAGCTTCTGCATGGACTAAGTTATTTGCATGGGGTC AGACATTTAGTCCACAGAGACATCAAACCAGCAAATATGCTTGTAAATCTCAAGGGCGAGCCAAAAATAACAGACTTTGGAATAAGTGCCGGTCTAGAGA ATTCAGTCGCAATGTGTGCAACTTTTGTTGGAACAGTTACTTATATGTCACCGGAGAGAATTCGAAATGAGAGCTACTCACATCCAGCGGATATTTGGAG CCTTGGCCTCGCTCTCTTTGAGTGTGGAACCGGGGAGTTCCCTTACACTGCTAATGAAGGACCAGTCAATCTTATGTTGCAGATTTTGGACGATCCATCT CCTTCACCACCCAAGGATAAGTTTTCACCTGAGTTCTGCTCATTTATTGATGTTTGCTTACGTAAGGATCCAGATGCAAGGCCTACTGCAGAAGAGCTCC TTTCTCACCCATTCATTATGAAGTACGCTCACACTGCAGTAGACTTGGCTGCATTCGTTCGAGGTGTTTTTGATCCAACTCAGAAAATGAAGGATTTAGC AGATATGCTGACAATCCACTACTACCTTCTTTTCGATGGACCGGACGAGTTTTGGTTTCACGCAAAGAAATTGTACAGCGAAGGGTCAACATTTAGTTTC TCTGGGAACCAATCATTTGGTTCAAGGGACATCTTCATGGCCTTGTCGAACATCCGGACGACATTGGCAGGTGACTGGCCTCCTCAGAAGCTTGTTCATG TGGTCGAAAAGCTACAGTGTCGTGCTCATGGCCAGGATGGTGTGGCGATAAGAGTATCAGGGTCTTTCATAATCGGAAATCAGTTCCTTATTTGTGGGGA TGGCATACAAGTTGAAGGACTGCCGAATTTTAAGGATCTGTCAATTGATTTAGCCACCAAGCGAATGGGTACTTTCCAGGAGCAGTTTATCATGCAACCA GGAACCGCCATCGGGTGCTACTTCATAGCTAAGCAAGAGCTTTACATCATGCAATAG
AA sequence Show only first row Show all	>Lus10022265 pacid=23139424 polypeptide=Lus10022265 locus=Lus10022265.g ID=Lus10022265.BGIv1.0 annot-version=v1.0 MAGLEELRKKLTPLFDAEKGFPAGPSLDPNDSYMLSDGGTVNLLSRSYGVYNINELGLHKSTSSPIGNTEHSEKTYNCASHEMRIYGAIGSGASSVVQRA IHIPTHKILALKKINIFEKEKRQQLLTEIRTLCEAPCYEGLVEFHGAFYTPDSGQISIALEYMDGGSLADILRLRKTIPEPVLSFMFQKLLHGLSYLHGV RHLVHRDIKPANMLVNLKGEPKITDFGISAGLENSVAMCATFVGTVTYMSPERIRNESYSHPADIWSLGLALFECGTGEFPYTANEGPVNLMLQILDDPS PSPPKDKFSPEFCSFIDVCLRKDPDARPTAEELLSHPFIMKYAHTAVDLAAFVRGVFDPTQKMKDLADMLTIHYYLLFDGPDEFWFHAKKLYSEGSTFSF SGNQSFGSRDIFMALSNIRTTLAGDWPPQKLVHVVEKLQCRAHGQDGVAIRVSGSFIIGNQFLICGDGIQVEGLPNFKDLSIDLATKRMGTFQEQFIMQP GTAIGCYFIAKQELYIMQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40440		ATMKK3	mitogen-activated protein kina...		Lus10022265 [exp]	0	1
AT5G64560		MRS2-2, ATMGT9	magnesium transporter 9 (.1.2)		Lus10008803 [exp]	9.5	0.8236
AT5G67390			unknown protein		Lus10011531 [exp]	10.5	0.7714
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10034017 [exp]	19.5	0.8253
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10020104 [exp]	21.0	0.8081
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10007698 [exp]	31.4	0.7958
AT1G69340			appr-1-p processing enzyme fam...		Lus10037119 [exp]	32.3	0.8113
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Lus10004591 [exp]	44.8	0.7985
AT1G74780			Nodulin-like / Major Facilitat...		Lus10042170 [exp]	59.1	0.7715
AT4G16150	CAMTA		calmodulin binding;transcripti...		Lus10036455 [exp]	66.7	0.7640
AT4G00590			N-terminal nucleophile aminohy...		Lus10040935 [exp]	76.9	0.7340

Compare expression of checked genes

Lus10022265 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.