Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001136 [exp] 1141 / 0 AT5G40450 67 / 2e-10 unknown protein Lus10001135 [exp] 576 / 0 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022266 pacid=23139487 polypeptide=Lus10022266 locus=Lus10022266.g ID=Lus10022266.BGIv1.0 annot-version=v1.0 ATGGCTAGTAGTGAAGTTGAACAGATCGTGGAACCTCTTCCTATCTCGGAAGTAGAAGGGGTGGAGAGCAGGTACCTGAGAGCTGAGGTTGAAGCTGCTG TGAGCATAGTCAAATCCACCGAAATCCAACTCCACCATACTTCTCCTCAACAAGACTTTGCTGGTTTTCTAGAAAAGCCCATTTCCGAGGATGATAATTT TTTGGAATCATCCTCGGATGGCATCAATAAGGTTGAGAACCAGAAGGAAGCCATAAAGTTAGTAACAGAAGAAGTAAAAGTGCCAGAGATTCTTGACAAG TCAGGTGAAGCAAAAAGAGAAGAAGAAATATCAGATAATGGAGTTCAGAATTCAACCGAAGATGAAGCAATTGAGAACACTGAAATTGCAGTAGCTACAA CCCCAGTTGATAAAACTGACGATATCACATCATCATCATCATTGGTGGAAGCAGAAGCAGAAGCAGTGCCAGTGGAGAATATCTTGCCCGTAGTGGAAAT GTTGACAAAAGAAGTATTTAGTGATCTGGGAACAAAGAGCAATGATGATGCAACTGAGGCACTGGATACTGCAGAGAGCAGCAAAGACGGGTCCCTTGAC ATTGTTAAACAAGAGGAGATGCATGATGAATCTCAGACCACAAGCATAGGAGAGATTGCTAACGAGATGTCGACTAAGGACGAGGAACTAGAGACTGAAG CAATTGTTGAACAAGGAGAAATTGTCGAGACCCCACAGGACAAATTCGAGGATTCAGAAGAAACGAATGAAGAGGCAGAGGACATCAAGAAGGAAACAAC TGAAACAGTTGATGAACCTTCCCTTGGCATTGAGGCAACTCATGATCCGAATCATCAAAGCTCCATAACAACTGTTCAAACTTCGATGGAAAGTGATAAC TTGACAGTTGAATCCAATGAGAATAGTAAGGGTCTGGAAGAATTTGTTGACAAGAAGGTCGAAAAGGAGGCATCCGAAACAGGAAAACTGTCGGAAGAAG CACAGCAGTTGGCGATTCCAGGGTCTTCAGAAGCAGAGGAAACTTCCTCAGGTAAATTGGATGATGTAATTACCCAAGAGAAGGCAGAGATTCCTAAAGA AGACAGCAATGAAGATCTGGTGAATGAAAACAAGGCAACAGATTCCTCCTTTGAGCCATATCCAATTGAAGAGGTGACCTTGCAAAAAGATGAAGAGAAT GTTGAGCTCTCAGATACAAAGACTGAAACTGCTGGAGAAGTTGAGAGCAGTATTCCAAGAGAGACTGAACAGAACGATGATGCTGCAAGAGTTTCATCTG ATGAACCTGAATCCATAACTGAAACTTCGCAGGAGAAGACACAGAATGAAAGCAAAGCTGAGGTAACTGAGACCGACGAGAGTACTGAGAAGGAAATATT GGAAGATAAGGAACCAGATTTGCAGAAGAATGACGTTGAAGAGATTATCGAACAGTCCTCCGATGCAGAAACTGAAGGATTTGCTGTCAGTGAAAACACC AAAGACAGTGTTGAAGAAATTGGTGTTGAAAATGTTCTACCAGAGAAAGAACATGAATCAGAAGCTGTACAAGAGAATCCTGAAGACGTACTAGTCTCTG AACTCGAAATTGTGACTGAAGGTGATAAGGCAGCAGTAGTGCAGAAAGAATTGCCAGAGGTTGAAGCGGTGTTGGAAAAGGAAGCAGATAAGGAAAGTGT AGCTGAAGAGAAATTATTACCTGAAGCAGAAGAAGGAGGAGCAAGCGTTGAAGATCTGAAACCAGAGGCTGAAAATCAGATTGCAGAAATAGATGAGCCT AAGCAGGCTACTAATGTGACCGAAGAGGCAAGAACAACCAAAATATTCTGTTGCCGACTTTACAATCTTTGTTCACTCTTGTATTTCTTTCAGGTTCACA ATGAAGTCGCAAAAGGCAACGTTGAGGAATCTAATGAGGAAGCGAAAGCGAATGAAGAGCTGATGAAACCAGAATGTATTGAAGAAATGGATGGGATTTC AAAGCCTAATGTTGTTACAGAAGAGGCTGACAAACAAGACTGCAGTGATATAAAGGAAGCTGCAGTGGAAGATGAGAGCCTTAATGCAATTACGATGACA GAGATAGAAGAGGAGACCACTTTGGAGAAAGCGAAGATACAGGACAAGGAAATCGACGAACCGGATGATAAGTCGAAGGATATAAGCACAACTGAAGCTC TGTCCAGCCAGGAAGTCGAACCTGCTGCTCCAGGTGAAGCAGATCATGAGCAAAACAACAAGCAGCAGCATTCTGATACGGTCCGTGAATCTGGAATTCC TGAAGAGGACAAGCTGCATCCTGAAGTTATTGAAGAGGAATTGGTGAAAGAAAATCTAGAACGTGTAGCTGGATCACAAGGTGTTGAGGTAGTTTCAGAA AGTGAAGCCATTCCAGAATCCGATGAACTCCATTCCCAAGAAACAGAAGAGAAAACAAGAGATATGATAGTTTCACAGAATGACATTCCTGAAGATACAA CAGAAGAGATATCCCTTAAAGATGTGGAGCCTAGGGAGTTTGAAGTTGATCCCAATGAAAGAGCTTCAACAGTGGCGGTTGAAGAGGAAATCAAACAAGT ATCTGAAAGCCTTGAAGTCGCAGCAGTTGATGAATCCGTGAAGGAGGAGAAATCTGAAGCTCAACATCAGGCACAACCTTCTGCATTGCTTGCAGAGAAG GAGGAGCTCGAAGGATTAACTAAAACTGAGGAATTGAAGGAGGAGTTTCTGGAAACTGAACTACAAGCTGACAGAGAACCTCTGGTGGAGAAGGTTGAAG TCTCTAAAGCAGAGAGTGAAGCAGCTGATGTCACCGAAATCGAGATCCCTGAAGATGCTTTGAAGGAAGAAATACCGGTTTCAGATGAGGTGAAATGCAT CCGAGATACTTCAGATTCCTCTATGCAGACAATCTCAGATCAAGCTCTTCCTAAGGAAGCACCTGAAATGGTAGAAGATGCTCCAAAACAGGCAGAAGGA GAATGTAATTTACAGGAGCTGAAGGTCCCTCAGTTAGAACACATAGTCGAGAAAGAAATCGAGGATGAAGTTTTTGTTCCTTCAGCTGTAACTGATGAAG AAGCCAGAGAAATTCCGGAATCAGCGTTCGATGCATCAGAAAGTAAGCCAAAAGAAGATAAAGTTGAGCCTCCAGAAGTGGACATTTCAGTACCTGAAAC TACAACAGCAGTCAAAGAAGCATCAGCAGAAGACAATCCAAAACAGGCAGAAGAGGAGCTGAATCCAAAAGTCACCCAACAAGTTGAAACCGATGTACAG GAAATCGGAAATGCTCCAGCTGAGACTGATGAAGGGACCAAAGAAATTTCTAAATCACTTAAAACTCCTGATACTCCTTCGCCCTCCACAACAATGGAAG AAGAGCCACAACAAGTGTCAAGAGAGTTTGAAGTTACTAAGGAAGAATCCATCGAGGAGAATGAATCAGAAGTACAACCTCCTGCAGTGATTCCAGAGGA GGTGTCAAACGAAAGCTCGACTAAAACCGAGGAAATGAACGAGGAGGTGCTGGCAACTGAAGGAGAGTCCTTCTTGATCTCTAAAGTAGAGAGTGAAGCA GCTAATGTACAAGAAAGGGAGAATCCTGAAGATGCATTGAAGCAAGAAATTGTGGCTGCAGATGATCAAGAAGCTTCAGATTCCACTTTGAAGAGAATTT CAGAATCCAATGAAGAAATGCTGGAAGTTCAGTCTTTGCCTGAAGAACACAAATCAGAAGATGGAGAATCATGTCCTGAAATCCAACTGGAAGGAAAGCA GCACAGAGATTCAGATGCAACTGAAAACAAGGACACGAATGGCGCAGAAGAACCTGAGGAGTTGGAAGATACTAAAAACCAAACGGAAGGAGAATGCAAG CCAGAAGAACGTGTCCAGGAGGTCAAAGTCCCAGCAATTGTAGAAGAAACTCAGAAAAAAGAAGTTCAGGATGAAGTTATTTTTCCATTGGCTGACACTA AAGTAGAAGTCAGTCCAATGATAGAACCAGCAGCTGAAGTAATTACCAAGGAAGAAATCGAGGACAAGCCAAACCAGGAAGAAGAAGAAGAGGAGCTGAG TGCCAACCATGGCGAGGATGAAGTTGCAAATGACAGCCAGGAAAGTCAAAACATACAGAAGGCAGATGCTGCAGCTGAGGTTTCTGAAGAAACCCAAGAA GTTTCGGAATCACTGTCTACCTCTGATTCTCCAACTTCCACTACAACCATTGAAGAAGAAACCCAGGAAAAGGAAGTTCAGGATGAAGTTATCGTTCCTT CAGCTGACATTAAGGAAGAAGTCAGAGAAATCTCCGAGGAAACACCAGAAGACAAGCCAAAACATGCAAAAGAAGCTCCTGCACAACTAGAAGAGGTGCC GAGTATCAACCAAGTGGAGCCCGAAGTTGCAGATGACGCACAGGAAAGTGAAATTTTACAGAAGGGAGATGCTGTAGCTGAGACTCTGGAAGAAACCCCA CAAGTTTCTGAATCACTGTCTACCACTGTTTCTTCATCTCCCACAAGCAGGCAAGAAGAACAAGGTTCAAGAGATTTCCACGTCTCCGAGTTAGAGCCTC GAGTTGAGAAGGACGCATTTGAGGACACCGTCGAGGAGAACGAATCAGAAGTACACCCCCCTGCAGTGATTCCGGAGAAGAAGGAGCACGAAAGCTCAAC TATAACCAAGGAAAGAGTAGAGATTGAAGCAGCTAATTTCCAAGAAAGGGAAAATCCTGAAGTCGAATTGAAGCAGGAAATTGTGGCTTCAGATTCCACT TTGAAGACAATCGCAGAACCCAATGAAGCAGCGCAGGAAGTTCAGTCTCTCCCTGAAGAACACAAATCGGAAGATGGAGAATCATATCCTGAAATCCAAA TGGAAGGAATAAAAAACACGGACAAGAAGACTGCAGAAGAACCTGAGGTGCTAGAAGAATGCAAGCAAGAAGAAGGTGTCGAAGAGGTCAAGGTCCCAGA AGTTGAAGCAGAAAGTCGCAAACAAGAAGTTCAGGATGAAGTTATTATTCCTTTAGCTGACGTTAAGGAAGAAGCCATTCGAATTCCAGAACCAGCAGCT GAAGTAATTTCTAAGGAAATACCAGAGGACAAGCCAAAACAAGAAGAAAAAGAAGAAGAAGAAGAGCTGAGTGTCAACCATGAGGAGGCTGAAGTTAAAA ATGAAAACCAGGAAATTGAAAACTTACCGAAGGTAGATGCTGCAACTGAGGTTGCTGAAGAAACCCATGAAGTTTCTGAATCAATGTCTACCTCTGATTC TCCAACTCTCACAACCTGTGAAGAAACCCAGGAAAAGGAAGTTCAGGATGAAGTTATTGTTCCTTCAGCTGATATTAAGGAAGAAGTCAGCGAAGTTTCT GAGGAAGCACCAGAAGAAAAGGCAAAACAGGCAAAAGAAGCTCCTGCACAAGAAGAAGAGGTGCTGAGTATCAAGCAAGTGGAGCCTGAAGTTGCAAATG ACGTAGTAGAGGAAAGTGAAAACTTACAGAAGGGAGATTCTGCAGCTGAGAGTGTTGAAGAAACCCCACAAGTTTCTGAATCACTGTCTACCACTGTTTC TCCATCCCCCACAAGTAGGCAAGAAGAACAAGGTTCAAGAGATTTTCAGGTCTCCGAGTTAGAGCCTCGAGTTGAAACGAGCACATTTGAGAGCAAAGAA GCCAACCACACAGAAATCAAAGAAGTTTCCGAAGTAGTAACTAAGTCTGATTCCCAGGAAACTGAAGGCATTGTAGAAAAAGAACTCAGTTCTCTTCAGA CTCTCCTTGTTGAGGAACCAGAGAGACAGTCTCATCAGACACCCGAGATCAAGCCTGAAGATTCAGAAACAAGCGAGTCAGTACTAGTCAAAGAACTGGA ATTGGTGCCAAAAATAAGTGATGAGGAATCTTTGTTAAAGAAAGATTCCACAGTTGAATCAGGCCTTGCAACAGAAGTACAACAGGAGAATGATGCTTCA GAGTTTGAGTTTCAAGGTTTTAAAGTAGAAAAAGAAGATACAGATTCTTATCAGCCTTTACCAGAGGAAAAACCAGAACAAGGAGCGCATGTTCCTCCAG CAGTACTGCCGGAAGAACACAAAGAAGCTTCGGAATCATTGGGAAAAAAACCCTCCGGTATCACCACTGAAACAGCAAATGAGACTTCAGAGTCTGCATT AGAAGTTAGTCCCCACCAGGAAGTCATCACTAATCCAGAAGATAAGGTAGTCAATGAAACTCAACAAGAGGAGTCCACAGCTGAGCAGGTAATCAAGGAC AAGAATATTATCCAGGTTTGTTCCCCCGCAGAAGAAAGGAAGGAGAGTCAACCAGAAAGCGAAGAAAAGGCTGAAAGAATCTCTGATGGAGAGATTACTC AACCAAAGGAAAGCCAAAGTAAAGAGCTAAACCTGCAACCCAAGAATCCTGATGAGACGACAACTTCCATTCTTGGAGAACCGTTCGTTGAGAAGGAGAC CGTCAGCAAGGAAATCAATATTCCAAGTGAAGAACTCGGAAAAATTGTTGAGGAAGAACAAACAAAATTGAAATCCGAAGAGCAAAGCAGTCAGGCAATT ACTGAAGCAATCAATGCAGCAGAAACCACAACTGTGATTGATAAGGAACTGGACACACATATATCACAAAGAGACCAGGAAGCTGAAACAGTCAATCCAG CAAAAATATCACTGTTCGACATGATGCAGCAGTCCACAAGGGTAACTCAATTGGATCTAGACTCGGAACCAGAGGATAAAGAACAAAAGGCAATAACAAC AGGAGATGAGACCAAAGCAGAAGCAGAGAAAGCAAAATCAGACGAAGAGAAAGAAGAAGACTATGAAAATGAAGAACAGCATAAAAATGATTCAGGGTCC GATGGACTAGTGATTGTTGAGGCAGTCAGCAAGGAGACAGAGACAGCAGTAAAGGTGGTTTCTCCGAAGAAGAAATCCCACAACATACTATCAGAAGTTG GGTCAAAGGTGAAGCATTCGATTTCCAAAGTGAAGAAAGTTATCACAGGGAAGTCCAGTTCTTCTAATCATACCAAGCCAAATTCAAGCTAA
AA sequence Show only first row Show all	>Lus10022266 pacid=23139487 polypeptide=Lus10022266 locus=Lus10022266.g ID=Lus10022266.BGIv1.0 annot-version=v1.0 MASSEVEQIVEPLPISEVEGVESRYLRAEVEAAVSIVKSTEIQLHHTSPQQDFAGFLEKPISEDDNFLESSSDGINKVENQKEAIKLVTEEVKVPEILDK SGEAKREEEISDNGVQNSTEDEAIENTEIAVATTPVDKTDDITSSSSLVEAEAEAVPVENILPVVEMLTKEVFSDLGTKSNDDATEALDTAESSKDGSLD IVKQEEMHDESQTTSIGEIANEMSTKDEELETEAIVEQGEIVETPQDKFEDSEETNEEAEDIKKETTETVDEPSLGIEATHDPNHQSSITTVQTSMESDN LTVESNENSKGLEEFVDKKVEKEASETGKLSEEAQQLAIPGSSEAEETSSGKLDDVITQEKAEIPKEDSNEDLVNENKATDSSFEPYPIEEVTLQKDEEN VELSDTKTETAGEVESSIPRETEQNDDAARVSSDEPESITETSQEKTQNESKAEVTETDESTEKEILEDKEPDLQKNDVEEIIEQSSDAETEGFAVSENT KDSVEEIGVENVLPEKEHESEAVQENPEDVLVSELEIVTEGDKAAVVQKELPEVEAVLEKEADKESVAEEKLLPEAEEGGASVEDLKPEAENQIAEIDEP KQATNVTEEARTTKIFCCRLYNLCSLLYFFQVHNEVAKGNVEESNEEAKANEELMKPECIEEMDGISKPNVVTEEADKQDCSDIKEAAVEDESLNAITMT EIEEETTLEKAKIQDKEIDEPDDKSKDISTTEALSSQEVEPAAPGEADHEQNNKQQHSDTVRESGIPEEDKLHPEVIEEELVKENLERVAGSQGVEVVSE SEAIPESDELHSQETEEKTRDMIVSQNDIPEDTTEEISLKDVEPREFEVDPNERASTVAVEEEIKQVSESLEVAAVDESVKEEKSEAQHQAQPSALLAEK EELEGLTKTEELKEEFLETELQADREPLVEKVEVSKAESEAADVTEIEIPEDALKEEIPVSDEVKCIRDTSDSSMQTISDQALPKEAPEMVEDAPKQAEG ECNLQELKVPQLEHIVEKEIEDEVFVPSAVTDEEAREIPESAFDASESKPKEDKVEPPEVDISVPETTTAVKEASAEDNPKQAEEELNPKVTQQVETDVQ EIGNAPAETDEGTKEISKSLKTPDTPSPSTTMEEEPQQVSREFEVTKEESIEENESEVQPPAVIPEEVSNESSTKTEEMNEEVLATEGESFLISKVESEA ANVQERENPEDALKQEIVAADDQEASDSTLKRISESNEEMLEVQSLPEEHKSEDGESCPEIQLEGKQHRDSDATENKDTNGAEEPEELEDTKNQTEGECK PEERVQEVKVPAIVEETQKKEVQDEVIFPLADTKVEVSPMIEPAAEVITKEEIEDKPNQEEEEEELSANHGEDEVANDSQESQNIQKADAAAEVSEETQE VSESLSTSDSPTSTTTIEEETQEKEVQDEVIVPSADIKEEVREISEETPEDKPKHAKEAPAQLEEVPSINQVEPEVADDAQESEILQKGDAVAETLEETP QVSESLSTTVSSSPTSRQEEQGSRDFHVSELEPRVEKDAFEDTVEENESEVHPPAVIPEKKEHESSTITKERVEIEAANFQERENPEVELKQEIVASDST LKTIAEPNEAAQEVQSLPEEHKSEDGESYPEIQMEGIKNTDKKTAEEPEVLEECKQEEGVEEVKVPEVEAESRKQEVQDEVIIPLADVKEEAIRIPEPAA EVISKEIPEDKPKQEEKEEEEELSVNHEEAEVKNENQEIENLPKVDAATEVAEETHEVSESMSTSDSPTLTTCEETQEKEVQDEVIVPSADIKEEVSEVS EEAPEEKAKQAKEAPAQEEEVLSIKQVEPEVANDVVEESENLQKGDSAAESVEETPQVSESLSTTVSPSPTSRQEEQGSRDFQVSELEPRVETSTFESKE ANHTEIKEVSEVVTKSDSQETEGIVEKELSSLQTLLVEEPERQSHQTPEIKPEDSETSESVLVKELELVPKISDEESLLKKDSTVESGLATEVQQENDAS EFEFQGFKVEKEDTDSYQPLPEEKPEQGAHVPPAVLPEEHKEASESLGKKPSGITTETANETSESALEVSPHQEVITNPEDKVVNETQQEESTAEQVIKD KNIIQVCSPAEERKESQPESEEKAERISDGEITQPKESQSKELNLQPKNPDETTTSILGEPFVEKETVSKEINIPSEELGKIVEEEQTKLKSEEQSSQAI TEAINAAETTTVIDKELDTHISQRDQEAETVNPAKISLFDMMQQSTRVTQLDLDSEPEDKEQKAITTGDETKAEAEKAKSDEEKEEDYENEEQHKNDSGS DGLVIVEAVSKETETAVKVVSPKKKSHNILSEVGSKVKHSISKVKKVITGKSSSSNHTKPNSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40450			unknown protein		Lus10022266 [exp]	0	1
AT2G35610		XEG113	xyloglucanase 113 (.1)		Lus10027804 [exp]	2.0	0.8619
AT3G17920			Outer arm dynein light chain 1...		Lus10041988 [exp]	4.9	0.8363
AT1G36050			Endoplasmic reticulum vesicle ...		Lus10036449 [exp]	8.2	0.8138
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10008139 [exp]	9.1	0.7778
AT1G48540			Outer arm dynein light chain 1...		Lus10017994 [exp]	10.0	0.8341
AT5G35980		YAK1	yeast YAK1-related gene 1 (.1....		Lus10009542 [exp]	10.8	0.8207
AT1G22870			Protein kinase family protein ...		Lus10007901 [exp]	12.0	0.8220
AT4G16070			Mono-/di-acylglycerol lipase, ...		Lus10016834 [exp]	14.8	0.8249
AT3G52200		LTA3	Dihydrolipoamide acetyltransfe...		Lus10008412 [exp]	19.6	0.7714
AT1G63500			Protein kinase protein with te...		Lus10008494 [exp]	20.4	0.8352

Compare expression of checked genes

Lus10022266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.