Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40470 213 / 1e-63 RNI-like superfamily protein (.1) AT4G15475 67 / 1e-11 F-box/RNI-like superfamily protein (.1) AT5G27920 56 / 5e-08 F-box family protein (.1) AT2G25490 50 / 2e-06 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G01720 45 / 6e-05 RNI-like superfamily protein (.1) AT1G80570 44 / 0.0002 RNI-like superfamily protein (.1.2.3) AT1G47056 43 / 0.0003 VFB1 VIER F-box proteine 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002515 [exp] 556 / 0 AT5G40470 341 / 3e-110 RNI-like superfamily protein (.1) Lus10012764 [exp] 61 / 1e-09 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10001264 [exp] 57 / 2e-08 AT5G01720 781 / 0.0 RNI-like superfamily protein (.1) Lus10012214 [exp] 57 / 3e-08 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1) Lus10034013 [exp] 54 / 3e-07 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10002913 [exp] 52 / 6e-07 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10040998 [exp] 51 / 9e-07 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10011626 [exp] 51 / 9e-07 AT5G27920 107 / 3e-25 F-box family protein (.1) Lus10002014 [exp] 52 / 1e-06 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G069800 [exp] 358 / 9e-120 AT5G40470 295 / 2e-94 RNI-like superfamily protein (.1) Potri.006G238300 [exp] 59 / 2e-09 AT5G23340 98 / 1e-22 RNI-like superfamily protein (.1) Potri.016G128400 [exp] 59 / 5e-09 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G105400 [exp] 58 / 9e-09 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.005G022600 [exp] 54 / 2e-07 AT5G27920 626 / 0.0 F-box family protein (.1) Potri.003G179100 [exp] 52 / 4e-07 AT1G80630 494 / 1e-169 RNI-like superfamily protein (.1) Potri.005G088800 [exp] 52 / 5e-07 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.013G013100 [exp] 50 / 2e-06 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.018G027700 [exp] 48 / 1e-05 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G254100 [exp] 47 / 3e-05 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022269 pacid=23139493 polypeptide=Lus10022269 locus=Lus10022269.g ID=Lus10022269.BGIv1.0 annot-version=v1.0 ATGGATGAGATGCTCTGCGATGAACTACTGCAAGAACTCTTCACCAAAATCCCACCTGGGAATCATCCTCCCTCCTCTTCTTCTTCTTCTTCTTCATCAT CATCTTTATCAATTCCTCTAGTTTCCAAGCGATGGCTTCATCTCTACAGAGCATCAAAGACATCCCTTTCCCTCAGAATCACTCTCCTCAACCACCATCA CACAGATGATTCCTCCGCCGCCGCCGCCCTGTTTCAGTCCCTATCTTCTCTTCTCTCCAACTACCCTTTCCTCTCCTCCCTTTCCATCCTCCCTTCCGAT GATCCTTCTTCTTCTTCACCTCCCCGCTCTCTGGATTTCAACGATCATTTCCTCTTTTTAGTTTCCTCTCTATGCTTCAAACTCAACAACCTCAGGCTCC TCAACGCCCCTGTTTCTTCTCTTTCTCTTCGCTCCCTCTCCAAGTCCTGTACCCTCCTCACCTCCCTCACAGTTTCCCAATCCAGACCTTTGGATTTCCA CTGGATTTCTTGGTTTTCTTCTTTGAAAGATTTATCCGTCTATGTCTGCGACGGTGAGGGTCGGCAGTTTGATGATTATACAACAAATGAAGAAATCGAT GCAGAATTAGGGTTGGAAAGCGTCTCGCTTACGGGGATCGGAAGAGACGATTCGGGAATTGGTTATTTATGGAGGAGATGCAAAAGGCTAAAGAAACTGA GGCTTAAGAGCTGTGAAGGTATCGGCGACGGTGGCTCTTTCTGCTCTTTTGTGAATTGCTTGAAGTCTCTCCTAGAATTGGAGCTAAGGACTTGTAGGAA CATAGCCGATTTGCAACCACCATCTCTCAGCTATTGCAGTAATTTCACAAGTCTCAAAACTCTGAGGCTCCAGAGTTGTTGCCTTGTGACAGGTGAAGGA CTCAAGGCTCTTGGAATCGCCATCAGCTCGGGTCTCCAGGAATTGGCGCTGATCAACTGCGATGTCGTTGAGAGAGAATCAGGGTTGCTGGCCACGTTGG GGCAGAAGCTGAAGCAGCTGAGGAGACTGGATTTATCCTATAATGAGTACCTGTTTGATAAGGAGTTTGTTGGGATGTTAGCATCTTGTGCCAATTTGAT TGAGCTGAAGCTGAGAGGCTGCAGGGGGCTTACTGGCACGGCAGTGATGTCCATGTTCAGGAGTTGTAAAGGATTGGAGAGTGTTGATGTTGTGCATTGC GATGGGATTGGTTCTGGTGATGTTGAGGTGTTCTTGCTCAACTCCCCTCGGCTGAGGCGATTCCAGGTCGAGGAGAACAAGCTCTCCGGTGTCGCGAGGG CGTGGGCTGATCGAAGGTGCATCGAGGTTGTTGGTTAA
AA sequence Show only first row Show all	>Lus10022269 pacid=23139493 polypeptide=Lus10022269 locus=Lus10022269.g ID=Lus10022269.BGIv1.0 annot-version=v1.0 MDEMLCDELLQELFTKIPPGNHPPSSSSSSSSSSSLSIPLVSKRWLHLYRASKTSLSLRITLLNHHHTDDSSAAAALFQSLSSLLSNYPFLSSLSILPSD DPSSSSPPRSLDFNDHFLFLVSSLCFKLNNLRLLNAPVSSLSLRSLSKSCTLLTSLTVSQSRPLDFHWISWFSSLKDLSVYVCDGEGRQFDDYTTNEEID AELGLESVSLTGIGRDDSGIGYLWRRCKRLKKLRLKSCEGIGDGGSFCSFVNCLKSLLELELRTCRNIADLQPPSLSYCSNFTSLKTLRLQSCCLVTGEG LKALGIAISSGLQELALINCDVVERESGLLATLGQKLKQLRRLDLSYNEYLFDKEFVGMLASCANLIELKLRGCRGLTGTAVMSMFRSCKGLESVDVVHC DGIGSGDVEVFLLNSPRLRRFQVEENKLSGVARAWADRRCIEVVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40470			RNI-like superfamily protein (...		Lus10022269 [exp]	0	1
AT2G45210			SAUR-like auxin-responsive pro...		Lus10001985 [exp]	1.0	0.9141
AT1G11050			Protein kinase superfamily pro...		Lus10012701 [exp]	1.7	0.8845
AT1G35830			VQ motif-containing protein (....		Lus10024738 [exp]	2.8	0.9141
AT2G39570		ACR9	ACT domain repeats 9, ACT doma...		Lus10005157 [exp]	4.2	0.8530
AT1G11050			Protein kinase superfamily pro...		Lus10001295 [exp]	4.9	0.8797
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10007457 [exp]	5.7	0.8535
AT2G35680			Phosphotyrosine protein phosph...		Lus10004376 [exp]	7.1	0.8743
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10020589 [exp]	7.9	0.8266
AT5G13810			Glutaredoxin family protein (....		Lus10039537 [exp]	8.4	0.8698
AT5G40470			RNI-like superfamily protein (...		Lus10002515 [exp]	9.5	0.8597

Compare expression of checked genes

Lus10022269 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.