Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70610 643 / 0 ABCB26, ATTAP1 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) AT5G39040 256 / 5e-76 AtALS1, ABCB27, ALS1, ATTAP2 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) AT2G47000 239 / 6e-67 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT1G27940 238 / 1e-66 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT3G62150 229 / 2e-63 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT1G02520 224 / 6e-62 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT1G28010 220 / 2e-60 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT1G02530 219 / 6e-60 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1) AT3G28345 217 / 2e-59 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT3G28390 217 / 2e-59 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036857 [exp] 560 / 0 AT1G70610 953 / 0.0 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) Lus10006209 [exp] 556 / 0 AT1G70610 939 / 0.0 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) Lus10007987 [exp] 275 / 1e-82 AT5G39040 875 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Lus10021145 [exp] 267 / 1e-79 AT5G39040 868 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Lus10010012 [exp] 246 / 4e-69 AT1G02520 1526 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10038050 [exp] 231 / 3e-64 AT2G47000 1697 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10009989 [exp] 228 / 7e-63 AT2G47000 1754 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10010067 [exp] 228 / 8e-63 AT1G02520 1748 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10041565 [exp] 226 / 3e-62 AT3G28345 1804 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G045900 [exp] 650 / 0 AT1G70610 1033 / 0.0 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) Potri.015G059800 [exp] 276 / 4e-83 AT5G39040 887 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.015G059700 [exp] 274 / 2e-82 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.015G059600 [exp] 270 / 6e-81 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.017G097200 [exp] 261 / 9e-78 AT5G39040 892 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.014G113000 [exp] 244 / 2e-68 AT3G62150 1767 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.002G187400 [exp] 241 / 3e-67 AT3G62150 1702 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.018G141400 [exp] 231 / 3e-64 AT3G28345 1204 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.014G113500 [exp] 223 / 2e-61 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.002G187500 [exp] 223 / 2e-61 AT3G62150 1860 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10022270 pacid=23139409 polypeptide=Lus10022270 locus=Lus10022270.g ID=Lus10022270.BGIv1.0 annot-version=v1.0 ATGGCGGCAGGTCGCCTGAATCTCTATACTCTCAGTTATAGCTCTTCAAGCGGGGAGATATTTCTCTCCAATTCGAGTCCGAGAATCGTACGCGTCTTCG CCAGAACTGATTTTTATTCGAGGGTTCAGTTCCCCACAACATCTCAAAGAATTAGATATCGATGCTTAAAATTTCCGCGCTGGGGATTTCGCGATGAAAA AGCCGTAGTTGGACAGACGGAGAATTCGGTGAACAACTTACAAACCCCGTTCGAATTTCTGCTGTCGATTTTTCCCGGAGGAAGCTGGTGGAGTCTGCCG GCTTATGAAGAGAAGAGCTCGGCGGAAAATGAAGTTACTGTACGGGATGCGCTCAAGTTAATGTGGGGATATCTGGGGAAGGAACAATGGATTGTTGTTG CTGCCCTAGGCGCTTTAATCATAGCTGCGATTGCGGAGATAACAATGCCGAGGGTGCTGGCAGCTTCGATCTTCTCTGCGCAGCACGGGGATAAGACGCT GTTCTACAGTAAAGCACATTTCTTGCTTGTTTTATGCTTCACTTCGGGAGTTAGCAGTGGCTTGCGCAGTGCCCTTTTTGCAACGGCAAATGTAATTCTT GTGAAACGCCTCAGAAAAGCTCTATATTCAGCTCTAATTTCCCAGGACATGGTGTTTTTCGATAGAGAGGAAGTTGGTAGCTTGACAAGCAGGTTAGGGG CAGATTGTCAACAACTTTCCAATGTCCTTGGGAATAACATTCACTTGATAGGACGCAATGCACTTCAGGGGCTGGGTGCATTGATCAACCTGCTGATGTT GTCTTGGCCTCTTGCGTTGTCATCAATTATCACATGTTTAGCTCTAGCAGCAATTTTTCTACTTTATGGCCGGTACCAGAAACTAGCTGCCAAGCTAACT CAAGATCTGACTGCCTCTGCCAGTGAGGCAGCAGAAGAAACCCTATCCTCAATCCGAACCATCCGAGTTTATGGAACAGAGAATGAAGAACTAGGAAGGC AGTATAAACATTGGCTAGAGAGGTTATCTTCTCTAAGTCTCAGAGAAAGTGTAGCGTATGGATTCTGGAACATGAGTTTCAGCATCCTTTTCCGATCAAC ACAGGTGTTTGCATTGTTGTTGGGCGGAATGGCTATTATGACCGGCCATGTCTCAACTGAGGATCTAACTAAGTACGTGTTGTATTGTGAGTGGTTGATT TATGCTACTTGGAGGATTGTAGACAATATAATCTCATTGTTTCGAGCTGTTGGATCAAGTGAAAGAGTTTTCCAGTTGATGAAACTGCCATGCAGTGACC AAGTCTTGTCCAAAGGGGTAAGATTACAGAGGCTGGATGGAAAAACCGAGTTTGTGAATGTGTCCTTCCGATATCCTTCAAGACCAACGATACCAATTCT GGAAAATTTCAACCTTTCAATGAAAGCTAATGAGGTCATTGCATTGGTTGGACCCAGTGGCAGTGGAAAAACCACTCTGGTTAATCTTCTGCTTCGTCTT TATGAACCAAGTAACGGAGAGATCTACGTTGATGGTTGCCCTCTCAGCAAGCTGGACATCAGGTGGCTCAGAGAGAACATTGGATTCGTTGGACAGGAGC CAAAGCTTTTCCACATGGATGTTAAGTCAAACATCACATATGGTTGTGACGAGGACATTACAGAAGAAGAATTGGAGCAGGCTGCGAAACTCGCACATGC CCATAACTTCATCCTGTCTCTCCCAGATGGTTACAGAACCATGGTAGATGGTAATTTGCTGAGTGGGGGACAGAAGCAGCGTCTCGCCATTGCCAGGGCT ATTATCAGAAAGCCTCCTATCCTCGTCCTAGACGAAGCTACCAGCGCCTTGGATTCACAAACTGAACATTTTGTCAAGGAAATTATTGAAGCATGCAAAA GTGGAGTGATGTGGAAAACAACAGTCATACTGATAGCTCACAGGTTGTCTACTGTGAAATCTGCAGACAGGATCATTGTGATGGATGGTGGTCGAATTGT AGAGATGGGAAGACACAAGGAACTGGTGCAGAAAAGGGGCCTATATTATCGCCTTGTAAAGTTACAATCCAGCTTCATCAGTTGA
AA sequence Show only first row Show all	>Lus10022270 pacid=23139409 polypeptide=Lus10022270 locus=Lus10022270.g ID=Lus10022270.BGIv1.0 annot-version=v1.0 MAAGRLNLYTLSYSSSSGEIFLSNSSPRIVRVFARTDFYSRVQFPTTSQRIRYRCLKFPRWGFRDEKAVVGQTENSVNNLQTPFEFLLSIFPGGSWWSLP AYEEKSSAENEVTVRDALKLMWGYLGKEQWIVVAALGALIIAAIAEITMPRVLAASIFSAQHGDKTLFYSKAHFLLVLCFTSGVSSGLRSALFATANVIL VKRLRKALYSALISQDMVFFDREEVGSLTSRLGADCQQLSNVLGNNIHLIGRNALQGLGALINLLMLSWPLALSSIITCLALAAIFLLYGRYQKLAAKLT QDLTASASEAAEETLSSIRTIRVYGTENEELGRQYKHWLERLSSLSLRESVAYGFWNMSFSILFRSTQVFALLLGGMAIMTGHVSTEDLTKYVLYCEWLI YATWRIVDNIISLFRAVGSSERVFQLMKLPCSDQVLSKGVRLQRLDGKTEFVNVSFRYPSRPTIPILENFNLSMKANEVIALVGPSGSGKTTLVNLLLRL YEPSNGEIYVDGCPLSKLDIRWLRENIGFVGQEPKLFHMDVKSNITYGCDEDITEEELEQAAKLAHAHNFILSLPDGYRTMVDGNLLSGGQKQRLAIARA IIRKPPILVLDEATSALDSQTEHFVKEIIEACKSGVMWKTTVILIAHRLSTVKSADRIIVMDGGRIVEMGRHKELVQKRGLYYRLVKLQSSFIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70610		ABCB26, ATTAP1	ATP-binding cassette B26, tran...		Lus10022270 [exp]	0	1
AT4G38120			ARM repeat superfamily protein...		Lus10008299 [exp]	3.9	0.8471
AT1G67140		SWEETIE	SWEETIE, HEAT repeat-containin...		Lus10033549 [exp]	10.2	0.8473
AT4G09680		ATCTC1	conserved telomere maintenance...		Lus10032880 [exp]	10.7	0.8124
AT5G56730			Insulinase (Peptidase family M...		Lus10012918 [exp]	12.2	0.8283
AT1G77800			PHD finger family protein (.1....		Lus10009785 [exp]	16.9	0.8484
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Lus10029717 [exp]	17.0	0.8186
AT5G15540		EMB2773, ATSCC2	EMBRYO DEFECTIVE 2773, ARABIDO...		Lus10015385 [exp]	21.4	0.8367
AT3G24870			Helicase/SANT-associated, DNA ...		Lus10011850 [exp]	28.6	0.8354
AT1G15240			Phox-associated domain;Phox-li...		Lus10035877 [exp]	28.6	0.7856
AT5G02770		MOS11	modifier of snc1, 11, unknown ...		Lus10014023 [exp]	29.3	0.7332

Compare expression of checked genes

Lus10022270 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.