Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40480 1883 / 0 EMB3012 embryo defective 3012 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002516 [exp] 806 / 0 AT5G40480 503 / 3e-163 embryo defective 3012 (.1) Lus10002517 [exp] 45 / 4e-05 AT5G40480 76 / 5e-17 embryo defective 3012 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G345100 [exp] 2236 / 0 AT5G40480 2192 / 0.0 embryo defective 3012 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF02368 [flax] [poplar] Big_2 Bacterial Ig-like domain (group 2)
Representative CDS sequence Show only first row Show all	>Lus10022271 pacid=23139476 polypeptide=Lus10022271 locus=Lus10022271.g ID=Lus10022271.BGIv1.0 annot-version=v1.0 ATGGCGGAGGAGACCACGTCCTGGTCGCCGTCGCTTGCGAGTTCTGGCCCTCACATTGCTGATGTCAACATACTGCTGCCTCCTAAGATGACATATTCCG TCGATTATCGGCTTCAAGGATATGATGGCTGCTTCAAATGGTCATGGGATCATCATGATATTCTGTCTGTCCTGCCTGAGTATAATGCAAGTAGCTATTG TTCCACCAGTGCAATGTTGAGCTCCATTGCTCCCTTTGATGGTCGGAAAGAGACTGCAGTTTATGCTACTGATACACAGACTGGGGTTGTAATTCGCTGC AAGGTTTTCATTGATAAGATCTCTAGAATTCAGATCTTTCATAATTCTATTAAACTGGATTTGGATGGGCTTGCTACACTTCGAGTTCACGCATTTGATG GCGAAGATAATGTGTTTTCATCATTAGTTGGCATACAGTTCATGTGGAAATTCGTGCCTGAACATCTTGGGTCTCATCATCTCGTCCATGTTCCTCTCAA GCATTCTCCTCTGAGCGATTGTGGTGGATTGTGTGCTGCATTGAATTTCAGGATAAAGCTGGAAGATGATGGTGTTTTCTCAGATCTGTGCGTTGTTAAA GGGGTGGGGATCGGACATGAGACTGTATCAGTGCAAATGCTTGAACCTCAACATGAGCACATGGCTGACAAGATCGTGTTTACAGTAGCGGAGGCCATGT CACTTGACCCCCCTTCTCCTGCATTTGTTCTAGTTGGCGCTGTTCTACAATATAATCTTAAAGTCATTAAGGGAAATGTTCCACAAGTGGTGGCATTACC ATCTCCGCATCATTACTGGTCTGTCTCCAACACTTCGGTTGCTGAAGTAGAGCCAATGCAGGGTTATGCCCGTGCTCTGAGTTTGGGAGTAACATCAGTT GTTGTAGAAGATAAACGAATTGCTGGCCATATACAGCTTTCCTCACTTAATGTGGTGGTTCCAGAAAGATTATATCTGTACATAGTGCCACTATCCGTTT CTGGTGACCCTGTGGATGGAGTGAAACCCGTCTCGTCTGGGTCTCCATGGTATGTGGTTTCTGGACGTAGTTATCTTATTAAAGTTAAGGTTTTCTCTGG TGGGCCTGATGCACAAGAGATCTATATTACAGAGAAAGACAAAATTACATGGTTCGATGGGTCAGCTGATTACTGGACTACATTGTTGCCATCGCCTGCT AGTGTTGTTGAACATGGTTGGTGGAATTATAAAGTCATCAATGTAACTTCACCGGGGTTTGGAGAACTGACAGCATCATTGACGTTTTTCCTTGAGGATC AGGGAAGAGTGCAGGTCCTGACAGTTGAGCAAAAAGTTATCATTTGTGATCAAGTGAAATTCACTTTCGACGGTAAAGTGGCATCTCAAGTTGTCCAACT TCCGTGGGCCCCTGCAGTTTACCAAGAAGTGGAGCTGAAGGCTGTGGGAGGTTGTGCCAAAGTATCAGCTGATTACGAATGGTACTCCTCGGATACTGCT ACTGTATCAATATCGACTTCAGCAATTGCCCTGGCTAAGAAGCCTGGTAAAGCCACTATGAAAGCTGTTTCTGGATTTGATTCCTTCAATTATGATGAGG TTGTGATTGAAGTTTCTTTGCCGTCATCCATGAGTATGCTGCCAAAATTCCCTGTCGAGACTGTTGTGGGATCACATCTTCAATCTGCAGTGACATTAAA ATCGTCAAATGGAGCCTACTTCTACAGATGCGATGCTTTTCATTCTTTCGTGAATTGGAGAACTGGAAGTGACTCTTTTGTTGTCCTCAATGCAACAGAG CATTTTTTTGCTGTTGAAAAGCTAGCTGATTCTGGTCATCGTGATGTGACTGGTCCACCTTGTTCATGGACTAACATTTATGCATCTGATTCTGGTCAGA CACTTCTGCAAGCAATTCTGTCGAAGGAATATCACAATTCTGATAATCACTATCACGGACCTCTTGTTTTAAAGGCTTCATCACGAATTGCAGCATATCC ACCACTTATCTTGGGACAGTTAGGTGATGGAAACCAATATGGAGGCTATTCATTTAAAGAAACAGATGATGTAGAGAATTTGGAGAAGTTAAATCTTGTC CCTGGAACAAGTTTGGATGTCATCCTGCTTGGAGGACCCAGACAGTGGGACAATGGTGTCGAGTTCATTGAAACTGTGGAAGTATTGGATGACAAGAACG TAAAAGATAAAGATGGACTTATTGTGCGTCAACTAACTGGCAGCTACACGAGTACATACAGAATTTTGTGCTCAGATCATGGGACCTATAAATTGGTTTC CAGACGTGGAAACTTGGTAGGAGATGAGCATCCACTGCCTGCTGTAGCAGAAGTTACAATATCCGTTTCTTGCAGTGTTCCTTCTTCCATTGCACTTATA ATTGATGAACCTGTTAATGAACGCGATCTTGTGAGGACTGTGGCTGTTGCTGAACGAAGCACTGGGCTGATTCAAATCACCCCAATTACCGTAGAGAGTG GCCGAACTCTCAGAGTCTCTGCTGTTGGCATTGCAACTCCAGGAGCAGCTTTTGCAAACTCATCTTCTCTTGATTTGAAATGGGAATTGTATGGCTGTGA GGGGTTAGCATACTGGGATTATGCTTATGAGTCAAAGCGGTCCAAATCCAGTTGGGAGAGGTTTTTAGTTTTGCAGAATGAAACAGGACAGTGCATTGTC CGTGCTACTGTTCGTGGCTTTAGGGAATCCATACGCAGTCAGTATTCTGCTGAGCTGCCATACAGTTCTCTGACTGATGCTATACATTTGCAGCTTGTGT CAACTTTGAGGCTGACACCAGAGTTCAGCTTGCTATATTCGAATGCCAATGCAAAGGTTAATCTTTCAGTTGTGGGAGGCAGTTGTCTCTTAAAAGCTGC TACCAATGATTCTCAAGTGGTTGAGGTTCTAGAATCTCCACCTGCCCTTCAATGTTTTCAGTTGACAATCTCCCCTAGAGGACCTGGGATTGCAAATGTT ACAGTTCATGACATTGGACTCGTCACTCCAGTTGCAGCGTCAGCTGTGGTCCAAGTTGCTGATATCGAGTGGATTAAGATTGTTTCAAGGGAGAAGATCA GTCTCATGGAAGGGCAGTCTCATTCCATAAATCTTATTTGTGGGATTAATAATGGACAAACTTTTGACTCATCTCAGTATGCATACATGGAGTTGGTAGT ACATACTGAGGATGACATAGTGGAAGCAGTAGATAGCAAGAAGCTGGGTAATTTTGCTTCCTTGTATCTTAATGCTCCTAACTTCGAGATCATTGGTAAA CGTCTAGGGCTCACAACTCTTTACGTTAGTGCTAGACAGCAATCTGGACATGAAATTTTGAGTCAACCAATACAGGTAGAAGTCTTTGCACCACTGAAAC TTCAACCGGAAGAGATCTTCCTCGCACCTGGGGCATCTTACATGCTGAATGTAGAAGGGGGGCCTACCATTGGCCAGAACGTGGAATTTGCTTCTGAGGA TGAAAGAATAGCTACAGTGGACAAAGCATCAGGCCTGCTGTCTGCTATTTCTCCCGGAAACACTGGAAATTTATTTTCTTTCTATGAGCTTTGCAAAGGG TACAAATGGACTATAAATGACGAAAAGGTGATGGAGTTCTACAGAATGGAAAAACTTCTTGGTGATAAACAACGGTTACCTTTGGATGATGATAAAGTCG ATTTTATCAAAGTCTTGTATGGAAGATCTGCCGGGAGGACATCTGTTGGAGTTACTTTCTCATGTGATTTTATTTCTAGTTCGTATTCACAATCAAGGAT GTATGATGCTTCTGTGTCATTGTTGGTTGTGCCTGATATCCGGCTCTTTCCGGGAGCTCCAACAGCATGGATTCTACCTCCTCACTATGTTACGTCTGCT CTACTGCCTTTATCTTTTGAATTGAGTGGTCCACGGGATAGTAGCCAAAAAGGAACAATCTCCTATTCCTTATTGAGGAATAGCTATGAGAAGAATGAAA TCAAGCAAGGTATTGTTCTTGAAGGAGATAGGGTAAGAACAGCAGAAAGTAACAATCTTGCATGCATACAAGCCAAAGATCGCATCAATGGAAAGACAGA CATCGCTTGCTGCATCAGAGTTGCCGAGGTAGCTCAAGTCCGAATGACAAATAAGGAGTTTCCATTTCATGTAGTTTATCTTTCAGTTGGTGCTGAACTT GATCTTCCCATAACGTACTTTGACATCTTAGGAAATCCGTTCCACGAGGCACACTATGTTGTTCCTTATCAAGTTGAAACGAACCATCATGACTTCGTTT CTCTCGGGGATATAAGACGGGGAAATATGAATATTAACCTCAAGGCATTGCAACCTGGGCGAGCTCTTGTGAGGGTATCACTCACTAGCAATCAGAAGAA GTCTGACTATATTCTTATTTCAGTTGGTGCTCATTTGTACCCTCAAAACCCGGTAATCCATGAAGGAGGTTCTCTTAGTTTCAGCGTACAAGGAATTAAT GACTGGGATCTAGGACGTTGGGATAGCTATAATAAGAGTGTCATATCTGTGGATGCATCTGGAAAAGCTGAAGCAGTTGGAGTAGGTTCAACTCGAGTAA TTTTTGAATGCCCAACGATGAAAGTGCAAACTGAGGTCACAGTGCTACCAGGAAATGTTTTTTCTGTTGTTCCTCCTAAAGAGATGCTGTCTAATGTTCC CTACCCAACCAGAGGATATAGCTTCCCTGTTGAATTGAGCGATGCCCACAAAATGTCTGAAACTGGTGGAACTGACAAAGTACTAGTTGATTGCAAGGTG GATCCATCATTTGTTGGATATGCAAAGCCACGGGTGGATTCAGACTCTGGAAATCTATACTGCGTCTTCTTCCCATATACTCCGGAACATTTGGCACGCT CAATGCCTAAGTCGAAGGATATAAGACGACATATATCTCTTTCCATTAACGTTTCACTCAGGGAAACCAATCATGTTTTGGGATCAGCATCTGCACTTTT TGTTGGGGGCTTCTCCATTCCAGAGATGCACAGGGGTTTCATGCAGTTAAATCTGACGCCAGACTCCAACAGGACAACTATAACCATCTTGGGGAACACA GATATCGACATTTATTGGCAGAAAAAGGATGCCATTTCGATCAACCTCATTGACAAGGAAGACTTTGGTGTTGGTGGCATAGCAACATACGAGGTGAAGG TGTTTGGTCCAGATGCAGTAAAGGACAGAGTAAGGGTCTCACTCCCTGCCAACGGCCAAGAAATGGTAATAGATGTGAACTACCAGCCTGCTGCAAAACC AGTAGCCATCAGCTTCCTCTTTCAAATATTAATATCGGCATTTCTGGCCAATACATGA
AA sequence Show only first row Show all	>Lus10022271 pacid=23139476 polypeptide=Lus10022271 locus=Lus10022271.g ID=Lus10022271.BGIv1.0 annot-version=v1.0 MAEETTSWSPSLASSGPHIADVNILLPPKMTYSVDYRLQGYDGCFKWSWDHHDILSVLPEYNASSYCSTSAMLSSIAPFDGRKETAVYATDTQTGVVIRC KVFIDKISRIQIFHNSIKLDLDGLATLRVHAFDGEDNVFSSLVGIQFMWKFVPEHLGSHHLVHVPLKHSPLSDCGGLCAALNFRIKLEDDGVFSDLCVVK GVGIGHETVSVQMLEPQHEHMADKIVFTVAEAMSLDPPSPAFVLVGAVLQYNLKVIKGNVPQVVALPSPHHYWSVSNTSVAEVEPMQGYARALSLGVTSV VVEDKRIAGHIQLSSLNVVVPERLYLYIVPLSVSGDPVDGVKPVSSGSPWYVVSGRSYLIKVKVFSGGPDAQEIYITEKDKITWFDGSADYWTTLLPSPA SVVEHGWWNYKVINVTSPGFGELTASLTFFLEDQGRVQVLTVEQKVIICDQVKFTFDGKVASQVVQLPWAPAVYQEVELKAVGGCAKVSADYEWYSSDTA TVSISTSAIALAKKPGKATMKAVSGFDSFNYDEVVIEVSLPSSMSMLPKFPVETVVGSHLQSAVTLKSSNGAYFYRCDAFHSFVNWRTGSDSFVVLNATE HFFAVEKLADSGHRDVTGPPCSWTNIYASDSGQTLLQAILSKEYHNSDNHYHGPLVLKASSRIAAYPPLILGQLGDGNQYGGYSFKETDDVENLEKLNLV PGTSLDVILLGGPRQWDNGVEFIETVEVLDDKNVKDKDGLIVRQLTGSYTSTYRILCSDHGTYKLVSRRGNLVGDEHPLPAVAEVTISVSCSVPSSIALI IDEPVNERDLVRTVAVAERSTGLIQITPITVESGRTLRVSAVGIATPGAAFANSSSLDLKWELYGCEGLAYWDYAYESKRSKSSWERFLVLQNETGQCIV RATVRGFRESIRSQYSAELPYSSLTDAIHLQLVSTLRLTPEFSLLYSNANAKVNLSVVGGSCLLKAATNDSQVVEVLESPPALQCFQLTISPRGPGIANV TVHDIGLVTPVAASAVVQVADIEWIKIVSREKISLMEGQSHSINLICGINNGQTFDSSQYAYMELVVHTEDDIVEAVDSKKLGNFASLYLNAPNFEIIGK RLGLTTLYVSARQQSGHEILSQPIQVEVFAPLKLQPEEIFLAPGASYMLNVEGGPTIGQNVEFASEDERIATVDKASGLLSAISPGNTGNLFSFYELCKG YKWTINDEKVMEFYRMEKLLGDKQRLPLDDDKVDFIKVLYGRSAGRTSVGVTFSCDFISSSYSQSRMYDASVSLLVVPDIRLFPGAPTAWILPPHYVTSA LLPLSFELSGPRDSSQKGTISYSLLRNSYEKNEIKQGIVLEGDRVRTAESNNLACIQAKDRINGKTDIACCIRVAEVAQVRMTNKEFPFHVVYLSVGAEL DLPITYFDILGNPFHEAHYVVPYQVETNHHDFVSLGDIRRGNMNINLKALQPGRALVRVSLTSNQKKSDYILISVGAHLYPQNPVIHEGGSLSFSVQGIN DWDLGRWDSYNKSVISVDASGKAEAVGVGSTRVIFECPTMKVQTEVTVLPGNVFSVVPPKEMLSNVPYPTRGYSFPVELSDAHKMSETGGTDKVLVDCKV DPSFVGYAKPRVDSDSGNLYCVFFPYTPEHLARSMPKSKDIRRHISLSINVSLRETNHVLGSASALFVGGFSIPEMHRGFMQLNLTPDSNRTTITILGNT DIDIYWQKKDAISINLIDKEDFGVGGIATYEVKVFGPDAVKDRVRVSLPANGQEMVIDVNYQPAAKPVAISFLFQILISAFLANT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40480		EMB3012	embryo defective 3012 (.1)		Lus10022271 [exp]	0	1
AT1G80070		EMB33, EMB177, ...	ABNORMAL SUSPENSOR 2, EMBRYO D...		Lus10011489 [exp]	1.4	0.9744
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Lus10041554 [exp]	3.2	0.9718
AT1G27595			unknown protein		Lus10028229 [exp]	3.2	0.9653
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10003700 [exp]	3.5	0.9674
AT3G06530			ARM repeat superfamily protein...		Lus10008676 [exp]	3.9	0.9691
AT1G80070		EMB33, EMB177, ...	ABNORMAL SUSPENSOR 2, EMBRYO D...		Lus10023129 [exp]	4.0	0.9574
AT2G34357			ARM repeat superfamily protein...		Lus10041232 [exp]	4.6	0.9609
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10001585 [exp]	4.9	0.9630
AT2G34357			ARM repeat superfamily protein...		Lus10041233 [exp]	6.3	0.9559
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10030088 [exp]	6.7	0.9560

Compare expression of checked genes

Lus10022271 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.