Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27580 656 / 0 D6PKL3, ATPK7 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) AT5G47750 637 / 0 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT4G26610 633 / 0 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT5G55910 627 / 0 D6PK D6 protein kinase (.1) AT2G44830 575 / 0 Protein kinase superfamily protein (.1) AT5G40030 551 / 0 Protein kinase superfamily protein (.1) AT1G79250 522 / 2e-180 AGC1.7 AGC kinase 1.7 (.1.2) AT3G52890 520 / 1e-174 KIPK KCBP-interacting protein kinase (.1.2) AT3G12690 508 / 1e-174 AGC1.5 AGC kinase 1.5 (.1.2.3) AT1G16440 501 / 9e-173 RSH3 root hair specific 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039105 [exp] 640 / 0 AT5G47750 792 / 0.0 D6 protein kinase like 2 (.1) Lus10016629 [exp] 639 / 0 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10038753 [exp] 639 / 0 AT5G47750 794 / 0.0 D6 protein kinase like 2 (.1) Lus10002518 [exp] 630 / 0 AT3G27580 504 / 3e-175 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Lus10042911 [exp] 585 / 0 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10022534 [exp] 564 / 0 AT5G47750 709 / 0.0 D6 protein kinase like 2 (.1) Lus10032185 [exp] 545 / 0 AT5G40030 669 / 0.0 Protein kinase superfamily protein (.1) Lus10014501 [exp] 544 / 0 AT5G40030 671 / 0.0 Protein kinase superfamily protein (.1) Lus10006273 [exp] 524 / 9e-179 AT3G52890 604 / 0.0 KCBP-interacting protein kinase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G344600 [exp] 785 / 0 AT3G27580 647 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Potri.016G004900 [exp] 655 / 0 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.006G003800 [exp] 653 / 0 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.002G137700 [exp] 603 / 0 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1) Potri.014G047500 [exp] 601 / 0 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.017G075400 [exp] 572 / 0 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1) Potri.009G146700 [exp] 539 / 0 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1) Potri.006G114900 [exp] 537 / 0 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Potri.004G186300 [exp] 530 / 2e-179 AT2G36350 623 / 0.0 Protein kinase superfamily protein (.1) Potri.008G080600 [exp] 521 / 2e-179 AT1G79250 684 / 0.0 AGC kinase 1.7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10022272 pacid=23139446 polypeptide=Lus10022272 locus=Lus10022272.g ID=Lus10022272.BGIv1.0 annot-version=v1.0 ATGGAGGAGTCCTCATTGGTTGATGGAGGAGCCAACACCAAAAAGTCAGCTATGGACACTAACAACAGCCAGATGAAACTCCAAGGAGCTTCCACATCAT ACTACAATGGTTCTTCAGTTGCTGTGAACACTGCTTCCCAATCTGGTGGATTTGAAATTTCCAAAACTGCCAAACAGTTTTACACTTCCAGCAAGGACCA CCCTGGCTCTATGGCATCATCTTCTGCTGCAAACAAGGATTTGGTTCAGCAATCCACTCCTGATGTTGAGAGTTCTACTTCAAGTAGCTCAGTCGAATCG GGATTTCGTCAGCTAAATGACATGCCTTTATTACCCTCCTCTTCTCAGCCAGTTGGCTATAGTGGAAGCCCTTCCAATAGCATTTACACTGCCACTTTGT ATGCAGAGGCTAAAGATAGCTTCACCAACACAGAGGTTAGTGAGGAAGTTGAGAAGTCTATTGAGAGTTGCAAAGTGAGCAACTCCCTTGATATTGAGAG CAGGAAGACGAGCATCTATCATAGAGGTAGCACGGGTAGTGATGTTAGCGACGAGAGTAGCTCGAGCAGTTTTAGCAGGAACTTGTACAAGCCTCACAAG GCGAATGATGTCAGATGGGAAGCAATCCAAGCTGTCCGGTCTCATGTCGGAGCACTGGAGTTGAAGCACTTCAAAGTGTTGAAGAAGCTAGGATGTGGAG ACATAGGCAGTGTTTATCTGTCCGAGTTGACCAGCACAAGAACGTATTTTGCGATGAAGGTTATGGACAAATCGTGCCTAGAGGCTAGGAAGAAGCTCCT CAGAGCTCAGACGGAAAGAGAGATTCTTCAGTCGCTGGATCATCCCTTTTTACCCACATTGTACTCTCATTTCCAGACCGAAAAATGGGCTTGCTTGGTG ATGGAGTTCTGCCCTGGTGGAGACCTGCATTCACTCCGCCAAAGGCAACCTGGGAAATACTTTCCTGAGCAAGCAGCACGATTTTACGTGGCAGAAGTTC TCCTTGCTATGGAGTACCTGCACATGCTGGGAATCATATACAGAGACCTTAAACCAGAAAACGTTTTAGTAAGGGAAGATGGCCACATAATGCTCTCTGA CTTTGACCTCTCCCTGAGATGTGCTGTATGCCCAACTCTTGTCAGATCATCAAAACCAAATGTAGCAACGGAGTCCAAAAACTCAGGCTACTGTGCACAG CCAGCTTGCATGGAACCAACATGCGTAATACAGCCGGATTGCCTCAAACCGGGTTGCTTTACGCCTCGATTCATGTCGAGCAGCAAGCAGAAGAAAGAGA AGAAGAACAAGAGCAACAAAAACAACAGCAAGGGAAGAAATGAGGTGAGTCATCAAGTGAACCCGCTACCCGAGCTGGTTGCAGAGCCAACGAATGCGAG ATCAATGTCGTTCGTGGGGACACATGAGTATTTAGCACCGGAGATCATCAAAGGAGAAGGACACGGAAGTGCTGTGGACTGGTGGACGTTCGGGATATTT CTGTACGAGTTGTTGTTCGGGAAGACACCGTTCAAAGGGGCGGGGAATCGAGCAACGTTGTTCAATGTGATCGGGCAGCCACTTAAGTTTCCAGAGTGTC CGAGTGTGAGCTTTGCTGCTAGAGATTTGATAAGAGGGTTGCTAGTGAAGGAGCCGCAGCATAGGTTAGCGTACAGGAGGGGAGCAACTGAGATAAAGCA GCATCCTTTCTTTCAGAGTGTGAACTGGGCTTTGATAAGATGCACCAATCCTCCGGATGTCCCCAGACAAGCAATGGTGGAGATGTTGGCAGCTGCTGCT GGTGATAATGTAGGGAGTGGTGTAGATGTGAAGTCATGTGGTAATTATTTGGACATTGATTTCTTCTGA
AA sequence Show only first row Show all	>Lus10022272 pacid=23139446 polypeptide=Lus10022272 locus=Lus10022272.g ID=Lus10022272.BGIv1.0 annot-version=v1.0 MEESSLVDGGANTKKSAMDTNNSQMKLQGASTSYYNGSSVAVNTASQSGGFEISKTAKQFYTSSKDHPGSMASSSAANKDLVQQSTPDVESSTSSSSVES GFRQLNDMPLLPSSSQPVGYSGSPSNSIYTATLYAEAKDSFTNTEVSEEVEKSIESCKVSNSLDIESRKTSIYHRGSTGSDVSDESSSSSFSRNLYKPHK ANDVRWEAIQAVRSHVGALELKHFKVLKKLGCGDIGSVYLSELTSTRTYFAMKVMDKSCLEARKKLLRAQTEREILQSLDHPFLPTLYSHFQTEKWACLV MEFCPGGDLHSLRQRQPGKYFPEQAARFYVAEVLLAMEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVCPTLVRSSKPNVATESKNSGYCAQ PACMEPTCVIQPDCLKPGCFTPRFMSSSKQKKEKKNKSNKNNSKGRNEVSHQVNPLPELVAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIF LYELLFGKTPFKGAGNRATLFNVIGQPLKFPECPSVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQSVNWALIRCTNPPDVPRQAMVEMLAAAA GDNVGSGVDVKSCGNYLDIDFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27580		D6PKL3, ATPK7	D6 PROTEIN KINASE LIKE 3, Prot...		Lus10022272 [exp]	0	1
AT1G23965			unknown protein		Lus10030844 [exp]	5.7	0.8922
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Lus10012845 [exp]	6.3	0.8899
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Lus10014356 [exp]	6.5	0.9002
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10012742 [exp]	7.4	0.8909
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10023910 [exp]	8.1	0.8173
AT1G08770		PRA1.E	prenylated RAB acceptor 1.E (....		Lus10018774 [exp]	13.2	0.8904
AT3G45780		RPT1, NPH1, JK2...	ROOT PHOTOTROPISM 1, NONPHOTOT...		Lus10036144 [exp]	13.2	0.8908
AT1G77020			DNAJ heat shock N-terminal dom...		Lus10029744 [exp]	15.5	0.8260
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10035976 [exp]	15.5	0.8788
AT5G57970			DNA glycosylase superfamily pr...		Lus10038388 [exp]	15.7	0.8683

Compare expression of checked genes

Lus10022272 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.