Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27570 323 / 6e-109 Sucrase/ferredoxin-like family protein (.1) AT5G40510 320 / 2e-108 Sucrase/ferredoxin-like family protein (.1) AT4G26620 290 / 4e-95 Sucrase/ferredoxin-like family protein (.1) AT5G55900 266 / 4e-86 Sucrase/ferredoxin-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002520 [exp] 523 / 0 AT5G40510 328 / 4e-110 Sucrase/ferredoxin-like family protein (.1) Lus10016627 [exp] 263 / 1e-84 AT4G26620 489 / 8e-172 Sucrase/ferredoxin-like family protein (.1) Lus10022532 [exp] 250 / 3e-79 AT4G26620 469 / 1e-163 Sucrase/ferredoxin-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G344400 [exp] 403 / 9e-140 AT5G40510 358 / 2e-122 Sucrase/ferredoxin-like family protein (.1) Potri.001G369300 [exp] 290 / 3e-95 AT4G26620 515 / 0.0 Sucrase/ferredoxin-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06999 [flax] [poplar] Suc_Fer-like Sucrase/ferredoxin-like
Representative CDS sequence Show only first row Show all	>Lus10022274 pacid=23139378 polypeptide=Lus10022274 locus=Lus10022274.g ID=Lus10022274.BGIv1.0 annot-version=v1.0 ATGGCTGACTCAGACCTTGCTGCTGTTCCTACTCTTCCGGCGGAGGATGTCGTCGCGAGCGACGATGAGAAGTTTGGGTTCAAGCGGTCGGAGATGTACA AGGAAACACTCGCCGGAACCGTTGATCGCTACGACCGCCACGTCTTCCTCTGCTACAAGAATCCAGAGGATTGGCTGCCTCGCATTGAGAACTCCGAAAC CGATACTCTTCCTAAGCTGCTCGCCTCTGCTATAAGAACACGCAAGAGCGAAATCACTGTCAAGACCAAGGTTACCACGTGCGAGTCACGCGAGGGGACG GGGTTTGAGGAAGGAGACGTGCTGATATTTCCTGATCTGATCAAGTATAAGGGTTTGAAGGACTCGGATGTTGATGGTTTCGTCGATGATGTTCTTGTGA ATGGAAAACCATGGGCTTCTGGGCTGCAGGAGACGTTAACTGGTTCACACATATTTGTGTGTGCTCATGGGAGCCGTGATAAGAGATGTGGTGTTTGTGG CCCAGTTCTAATGGAGAAGCTCAACGAAGGTATTGAATCTCGTGGGTTGAAAGACCAGGTGTATGTCAGTGCTTGCTCACATATTGGAGGGCATAAGTAT GCTGGCAATGTCATTGTTTACAGATCAGACTCAGATGGCAAAGTTACCGGCCATTGGTTTGGCTATGTTACTCCTGAGGATGTGCCTGAGATTCTGGATG AGCATATTGGGAAAGGAGAGGTGATCGAACGTCTTTGGAGGGGCCAGCTTGGAGAACCCATTGAAGTTGAAAGCTTTCCAGAACAGAAGGTTCCTAATGG AGAAGCCACAAAAGAAGTGAAGAAGCAAGAAGAAGAAAAGACGAGTGAGGTGGTGAAGGATAGTTTTGTTGGGTGTTGCCAGGAAGGTGTGAATGGCGTT TCATGTTGCAGAGAAGTGAGTGAAGAAAGTAAGAAGGAGAACTCGGGGAAGAAGGGGTGCGGTGGGAAATTGTCAAGCTGGGTAGGATCATTGGATCAGA GTGATGTGCTTGCTGGAGTGGCTGTGGTGGGAGCAGTAGCAACCATTGCGGTAGCTTATAGCTTCTACCGAAAGTCCGCCTGA
AA sequence Show only first row Show all	>Lus10022274 pacid=23139378 polypeptide=Lus10022274 locus=Lus10022274.g ID=Lus10022274.BGIv1.0 annot-version=v1.0 MADSDLAAVPTLPAEDVVASDDEKFGFKRSEMYKETLAGTVDRYDRHVFLCYKNPEDWLPRIENSETDTLPKLLASAIRTRKSEITVKTKVTTCESREGT GFEEGDVLIFPDLIKYKGLKDSDVDGFVDDVLVNGKPWASGLQETLTGSHIFVCAHGSRDKRCGVCGPVLMEKLNEGIESRGLKDQVYVSACSHIGGHKY AGNVIVYRSDSDGKVTGHWFGYVTPEDVPEILDEHIGKGEVIERLWRGQLGEPIEVESFPEQKVPNGEATKEVKKQEEEKTSEVVKDSFVGCCQEGVNGV SCCREVSEESKKENSGKKGCGGKLSSWVGSLDQSDVLAGVAVVGAVATIAVAYSFYRKSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40510			Sucrase/ferredoxin-like family...		Lus10022274 [exp]	0	1
AT4G26500		SUFE1, EMB1374,...	SULFUR E 1, MBRYO DEFECTIVE 13...		Lus10015605 [exp]	3.3	0.8556
AT3G58730			vacuolar ATP synthase subunit ...		Lus10038979 [exp]	4.2	0.8509
AT2G28190		CZSOD2, CSD2	copper/zinc superoxide dismuta...		Lus10016155 [exp]	4.9	0.8421
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10010440 [exp]	5.5	0.8077
AT1G69330			RING/U-box superfamily protein...		Lus10026648 [exp]	11.5	0.7315
AT5G57440		GPP2, GS1	GLYCEROL-3-PHOSPHATASE 2, Halo...		Lus10006954 [exp]	13.0	0.8080
AT5G47660	Trihelix		Homeodomain-like superfamily p...		Lus10039080 [exp]	13.9	0.8124
AT2G21170		PDTPI, TIM	PLASTID ISOFORM TRIOSE PHOSPHA...		Lus10012171 [exp]	16.6	0.8084
AT1G07780		TRP6, PAI1	TRANSIENT RECEPTOR POTENTIAL 6...		Lus10007494 [exp]	17.5	0.8090
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10005064 [exp]	27.1	0.8252

Compare expression of checked genes

Lus10022274 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.