Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14510 221 / 6e-70 ARM repeat superfamily protein (.1) AT4G12710 139 / 1e-37 ARM repeat superfamily protein (.1) AT3G03440 98 / 9e-23 ARM repeat superfamily protein (.1) AT3G01400 71 / 1e-13 ARM repeat superfamily protein (.1) AT2G25130 72 / 2e-13 ARM repeat superfamily protein (.1) AT2G23140 67 / 5e-12 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT3G54790 66 / 1e-11 ARM repeat superfamily protein (.1.2) AT1G67530 65 / 3e-11 ARM repeat superfamily protein (.1.2) AT4G31890 65 / 3e-11 ARM repeat superfamily protein (.1.2) AT5G58680 64 / 3e-11 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002521 [exp] 480 / 2e-171 AT5G14510 281 / 1e-93 ARM repeat superfamily protein (.1) Lus10041090 [exp] 133 / 9e-36 AT4G12710 411 / 5e-143 ARM repeat superfamily protein (.1) Lus10036415 [exp] 133 / 6e-34 AT2G04280 828 / 0.0 unknown protein Lus10033593 [exp] 100 / 2e-23 AT3G03440 395 / 4e-135 ARM repeat superfamily protein (.1) Lus10017635 [exp] 90 / 7e-20 AT3G03440 409 / 2e-141 ARM repeat superfamily protein (.1) Lus10024899 [exp] 73 / 8e-14 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10039047 [exp] 69 / 1e-12 AT4G16490 549 / 0.0 ARM repeat superfamily protein (.1) Lus10022919 [exp] 68 / 3e-12 AT2G23140 549 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10011514 [exp] 68 / 3e-12 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G344200 [exp] 293 / 6e-98 AT5G14510 310 / 5e-105 ARM repeat superfamily protein (.1) Potri.014G170100 [exp] 151 / 2e-42 AT4G12710 422 / 3e-147 ARM repeat superfamily protein (.1) Potri.004G088800 [exp] 103 / 7e-25 AT3G03440 389 / 7e-134 ARM repeat superfamily protein (.1) Potri.017G128100 [exp] 94 / 2e-21 AT3G03440 380 / 2e-130 ARM repeat superfamily protein (.1) Potri.005G225400 [exp] 74 / 5e-14 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G037700 [exp] 71 / 3e-13 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2) Potri.016G010800 [exp] 70 / 4e-13 AT4G16490 521 / 0.0 ARM repeat superfamily protein (.1) Potri.006G263100 [exp] 68 / 2e-12 AT4G31890 545 / 0.0 ARM repeat superfamily protein (.1.2) Potri.010G058000 [exp] 67 / 7e-12 AT1G24330 1079 / 0.0 ARM repeat superfamily protein (.1) Potri.005G144700 [exp] 67 / 9e-12 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10022275 pacid=23139376 polypeptide=Lus10022275 locus=Lus10022275.g ID=Lus10022275.BGIv1.0 annot-version=v1.0 ATGGAGGATTATGTGTTGCAGACTCTGTTCCATGGAGGAAGAGATGCTCAAATTGAGGCTGCTACCCAGGTGGGAAAGCTCAGCAGTAAGTCTAGGAGGA CATTGGTTGAGAATGGAGTCATTCTTCCTTTGATCTCCATGCTTCAGTCTCAGGATTATGAGCCCATTGAAGCTTCCCTTTTCGCCTTGCTCAGCATCGC CTTTGGCAGTGAAAGGAACAAGAGAGGAATGGTGAAATCAGGGGTGGTGGAGGTGTTACTGGGCCTTCTCCAATGGCGGAACGAGACGTTAACAGAGCTC ACTGTGGCAGCCTTACTCATCCTATCCTCCTGTGCACCAAACAAGCCATTGATCATAACCTCAGGAGCAATCGACCACCTTGTTCAATTACTAACTACCA CCACAACAGTCCAAACAAAGATGGATGCTTTAACCACACTCCACAACCTCTCGACCTGCAGCCAAGCAATCCCACCAATTGTTTCATCAGGGCTAGTCTT CACACTGCTCCAACTAATCACAACAACCCACCAAACACTGGCAGAGAAGGCAACGGCACTGCTGGAGGCGGTGGCGATTTCGTCCGAGATGGCAGTGGTC CAAGCGTCAGGAGGGATCCAGGCGTTGGTGGAGTTGATAGAGGAAGGGTCGTCCCCACAGTGCAAAGAGCATGCAGTTGGGGTGCTGCTGCTGATATGCC AGAGCTGCAGGGATAAGTACAGAGGGATGATACTGAGAGAAGGAGCCATGCCTGGGCTGCTACAGCTGAGTGTGGATGGGACATGGAGGGCCAGGAATCT GGCTCAGGAGTTGCTGCTTCTGCTAAGGGATTGTGAAGGTTATGGGTCCAGAGGGAAGCAGTGGAAGCAGGAGATGGTTGAACGGATAATGCAAGAGATC GACGCACAAGGGGATGATGATGATGATGATGATGATGATAATCGAAATGAGCAAGTTATAGGGAGTAGCAGCAGCAGTAGCAACAGTACAAGTAGAACTA CACTGAGATTAGTGGAAGAGATGATTGCCAAACTTACAACCTGA
AA sequence Show only first row Show all	>Lus10022275 pacid=23139376 polypeptide=Lus10022275 locus=Lus10022275.g ID=Lus10022275.BGIv1.0 annot-version=v1.0 MEDYVLQTLFHGGRDAQIEAATQVGKLSSKSRRTLVENGVILPLISMLQSQDYEPIEASLFALLSIAFGSERNKRGMVKSGVVEVLLGLLQWRNETLTEL TVAALLILSSCAPNKPLIITSGAIDHLVQLLTTTTTVQTKMDALTTLHNLSTCSQAIPPIVSSGLVFTLLQLITTTHQTLAEKATALLEAVAISSEMAVV QASGGIQALVELIEEGSSPQCKEHAVGVLLLICQSCRDKYRGMILREGAMPGLLQLSVDGTWRARNLAQELLLLLRDCEGYGSRGKQWKQEMVERIMQEI DAQGDDDDDDDDDNRNEQVIGSSSSSSNSTSRTTLRLVEEMIAKLTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14510			ARM repeat superfamily protein...		Lus10022275 [exp]	0	1
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009627 [exp]	2.0	0.9249
AT3G05880		RCI2A	RARE-COLD-INDUCIBLE 2A, Low te...		Lus10014028 [exp]	2.2	0.8988
AT5G62360			Plant invertase/pectin methyle...		Lus10031717 [exp]	2.4	0.9194
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009624 [exp]	2.8	0.9202
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009000 [exp]	4.9	0.9150
AT4G34530	bHLH	bHLH063, CIB1	cryptochrome-interacting basic...		Lus10040448 [exp]	6.3	0.8530
AT1G26260	bHLH	CIB5, bHLH076	cryptochrome-interacting basic...		Lus10023562 [exp]	7.3	0.8641
AT4G34770			SAUR-like auxin-responsive pro...		Lus10038192 [exp]	7.5	0.8768
AT5G18050			SAUR-like auxin-responsive pro...		Lus10008994 [exp]	7.7	0.8883
					Lus10029254 [exp]	8.8	0.8489

Compare expression of checked genes

Lus10022275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.