Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40530 342 / 5e-118 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002522 [exp] 490 / 5e-177 AT5G40530 374 / 2e-131 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G344000 [exp] 377 / 1e-132 AT5G40530 377 / 7e-133 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05148 [flax] [poplar] Methyltransf_8 Hypothetical methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10022276 pacid=23139482 polypeptide=Lus10022276 locus=Lus10022276.g ID=Lus10022276.BGIv1.0 annot-version=v1.0 ATGAACGAAGCAAACAGAAAACGCAAAAGAGGAGGAAAGCATGCCAACAAACAGAAGAATAACGACATCACCATCCCAAAACAATCTCCAAGTTCGCAAC TTGTTGATGCTCCTCCTAAGCGGCCGAAACCGTCGTCGTCTTCTTCTTTCCTCGACAAGATGAAAGCCAGATTGTCTGGGGGCCATTTCAGAATGCTTAA TGAAAAGCTCTACACTTGCACTGGAGGAGAGGCTTTTAACTACTTCAAAGAAGATCCATCCTTGTTTAATATGTATCATACAGGGTATCAAGAACAAATG TCACACTGGCCTGAGCAGCCTGTAAATGTGATCATAAATTGGCTAAAAAGTCACAGCCCTTCTTTTGTCGTAGCAGATTTCGGTTGTGGTGAGTGCCTTG ATCGAATTCTATTGTTTTGTAATCTTGCTAGTTTGTTGCCAGAGAATCAGGATGAGAAGGATGATTTAAACACTTTTCTGATGGGTTCATTCTCTTCCTC CTTGTTCAATTTGTCAGGAGATGCACGCCTAGCAAAAAATGTGAAAAATAAGGTGTTCTCTTTCGATCTCGTGTCCAACGATCCTTCGGTGATTGCATGC GATATGTCAAAAATTCCACTTGATTCTTCAGCTGTAGATGTAGCTGTATTTTGTCTTTCACTGATGGGGACTGATTATCCAAGTTACCTCAAGGAAGCAC ACCGGGTGCTCAAGCAAAGTGGTTGGCTTTTGATAGCAGAGGTGAAGAGTAGGTTTGATCCAACTACTGGAGGGGCGGACCCAAATAAGTTCTTGAAAGC CATTTCTGACTTGGGATTTATATCTGTACTGAAGGATTTCTCAAACAAAATGTTCTTCCTGTTCCATTTCCAGAAGAAGGAGAAGCGGCAGATCTCAAAG GGCAAAGAAATAGAGTGGCCAGAACTGAAGCCTTGCTTATACAAGCGCCGGTGA
AA sequence Show only first row Show all	>Lus10022276 pacid=23139482 polypeptide=Lus10022276 locus=Lus10022276.g ID=Lus10022276.BGIv1.0 annot-version=v1.0 MNEANRKRKRGGKHANKQKNNDITIPKQSPSSQLVDAPPKRPKPSSSSSFLDKMKARLSGGHFRMLNEKLYTCTGGEAFNYFKEDPSLFNMYHTGYQEQM SHWPEQPVNVIINWLKSHSPSFVVADFGCGECLDRILLFCNLASLLPENQDEKDDLNTFLMGSFSSSLFNLSGDARLAKNVKNKVFSFDLVSNDPSVIAC DMSKIPLDSSAVDVAVFCLSLMGTDYPSYLKEAHRVLKQSGWLLIAEVKSRFDPTTGGADPNKFLKAISDLGFISVLKDFSNKMFFLFHFQKKEKRQISK GKEIEWPELKPCLYKRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40530			S-adenosyl-L-methionine-depend...		Lus10022276 [exp]	0	1
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Lus10007555 [exp]	1.4	0.8979
AT2G37025		TRFL8	TRF-like 8 (.1.2)		Lus10026522 [exp]	1.7	0.8675
AT1G76405			unknown protein		Lus10025161 [exp]	3.9	0.8661
AT3G57000			nucleolar essential protein-re...		Lus10032053 [exp]	4.0	0.8729
AT1G07840			Sas10/Utp3/C1D family (.1.2.3)		Lus10029397 [exp]	4.2	0.8583
AT5G09250		KIWI	ssDNA-binding transcriptional ...		Lus10013733 [exp]	5.3	0.8674
AT1G60560			SWIM zinc finger family protei...		Lus10025765 [exp]	5.7	0.8485
AT3G56160			Sodium Bile acid symporter fam...		Lus10043443 [exp]	5.7	0.8599
AT3G11730		ATFP8, AtRABD1	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10041117 [exp]	7.2	0.8293
AT1G14770			RING/FYVE/PHD zinc finger supe...		Lus10015562 [exp]	7.3	0.8645

Compare expression of checked genes

Lus10022276 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.