Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39490 372 / 9e-124 CYP96A10 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) AT2G23180 363 / 1e-120 CYP96A1 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) AT4G39480 360 / 2e-119 CYP96A9 "cytochrome P450, family 96, subfamily A, polypeptide 9", cytochrome P450, family 96, subfamily A, polypeptide 9 (.1) AT1G57750 344 / 3e-113 MAH1, CYP96A15 MID-CHAIN ALKANE HYDROXYLASE 1, "cytochrome P450, family 96, subfamily A, polypeptide 15", cytochrome P450, family 96, subfamily A, polypeptide 15 (.1.2) AT2G21910 341 / 7e-112 CYP96A5 "cytochrome P450, family 96, subfamily A, polypeptide 5", cytochrome P450, family 96, subfamily A, polypeptide 5 (.1) AT1G65340 337 / 3e-110 CYP96A3 "cytochrome P450, family 96, subfamily A, polypeptide 3", cytochrome P450, family 96, subfamily A, polypeptide 3 (.1) AT4G32170 330 / 1e-107 CYP96A2 "cytochrome P450, family 96, subfamily A, polypeptide 2", cytochrome P450, family 96, subfamily A, polypeptide 2 (.1) AT4G39500 326 / 2e-106 CYP96A11 "cytochrome P450, family 96, subfamily A, polypeptide 11", cytochrome P450, family 96, subfamily A, polypeptide 11 (.1) AT1G47620 327 / 3e-106 CYP96A8 "cytochrome P450, family 96, subfamily A, polypeptide 8", cytochrome P450, family 96, subfamily A, polypeptide 8 (.1) AT5G52320 323 / 8e-105 CYP96A4 "cytochrome P450, family 96, subfamily A, polypeptide 4", cytochrome P450, family 96, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002525 [exp] 881 / 0 AT4G39490 410 / 2e-138 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10022279 [exp] 447 / 2e-153 AT2G23180 449 / 4e-154 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10002527 [exp] 442 / 3e-151 AT2G23180 454 / 7e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10025677 [exp] 426 / 9e-145 AT2G23180 361 / 1e-119 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10003669 [exp] 420 / 3e-142 AT2G23180 440 / 4e-150 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10028047 [exp] 408 / 4e-138 AT2G21910 375 / 1e-125 "cytochrome P450, family 96, subfamily A, polypeptide 5", cytochrome P450, family 96, subfamily A, polypeptide 5 (.1) Lus10025678 [exp] 402 / 8e-136 AT4G39490 363 / 9e-121 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10015306 [exp] 400 / 8e-131 AT4G39490 342 / 3e-108 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10035235 [exp] 367 / 2e-121 AT4G39490 359 / 2e-118 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G397900 [exp] 429 / 3e-146 AT4G39490 480 / 6e-166 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.005G064400 [exp] 424 / 4e-144 AT4G39490 477 / 8e-165 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.015G086900 [exp] 409 / 3e-138 AT2G23180 455 / 2e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Potri.015G087000 [exp] 382 / 5e-129 AT2G23180 373 / 2e-125 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Potri.015G132800 [exp] 385 / 6e-129 AT4G39490 589 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.007G080300 [exp] 379 / 2e-126 AT4G39490 574 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.005G092200 [exp] 310 / 4e-99 AT5G23190 788 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.007G072100 [exp] 306 / 7e-98 AT5G23190 799 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.008G183300 [exp] 304 / 3e-97 AT1G24540 682 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) Potri.010G050100 [exp] 301 / 2e-96 AT1G24540 684 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10022277 pacid=23139386 polypeptide=Lus10022277 locus=Lus10022277.g ID=Lus10022277.BGIv1.0 annot-version=v1.0 ATGCTTCCTAGCCTCTTTTGGAACTCATCCAACTACAACCTCCACGATTTCTTAACCCAAGCTCTCAAACGATCCGGCGGGACATTCTTGCTCAAGGGTC CTTCTTTCATTAACGCCGACTACATCGTCACGAGCGATGCCATGAACTGCCATCACATCTTCAGCCGGAACTCGGCCAACTATCACAAAGGCCACGATTT CAAGGTCATCATGGAGGCGCTGGGTGACGGCATCTTCAACGTCGACGGAGATTCGTGGAAGTTCCAAAGACAGCTCCTCCATTCCCTCTTGAACAACAAC GAGTTCGAGTCTCACACCATGAGAACCCTCCGCTTGAAGATGGAGTCTACGCTGTCCCGTGTCCTGGATGATGCATCCAAGCTCGAAACCGTGCTTGACA TGCAGGGCGTGTTCAAGAGGTTCATGTTCGACAACATATGCATGCTCGTGCTGGGGTCCGACCCGTGTTGTCTTACTGTCGATGGACTTTCGAGTAGTGT GTGTGACAAGGCGTTTGAGGATATGGAGGAGGCGGCTGTTTATCGCCACGTCGTTCCCATACCGGTGTGGAAGTTGCAAAATAAACTCAATATCGGTGCG GAGAGGAAGCTTATTCGAGCTTGGAGGATCATGGACCAGTTTCTATATGGGCACATCAAGGCCAAAAAAGAAGCCTTATTGTTAGCCAACAACAACAACG TAGCCACTAATACGATAAACAAGGCGCAAAAGCTTGACTTGTTGACACAAATCTTGGTTGGTAAAGAAGAAGAAGATTACAAGGGAGGATATTATTCGAA CAATAATATTGTCTCTCAGAAATCCAACAAGTTTCTGAGAGACAATGCGTTCACCTTAATAGCCGCCGGAAGAGACACTATCTCCTCGGGGCTGACATGG TTGCTTTGGATGGTTGCGACCCACCCGGAGGTTGAGAAAAAGATTGTAGACGAGATCAAACAAGTCATGGCTACACGGCCACGTGGCGGCGATATCGGAG GGATCAATACTAATGATAATAACAATGTCTTCCTCACCAAATACGAGCTGAACAAGCTCGTATACCTCCATGCAGCCGTATGTGAAACGTTTCGACTGTA CCCTCCGGTACCATTCGAGCACAAGTGCGCGATAGAGACGGACGTTCTACCAAGCGGTCACGTGGTCGAAAGAGGGACGAGGTTCCTGTTCTCGATATAC TCGATGGGGAGGATGGAAGAGACGTGGGGGAAAGACTGCATGGAGTTCAAGCCGGAGAGATGGATTTCGGATCGAGGAGGGATAATCCACGTGCCGTCTT ACAAGTTCATGACGTTCCTGGCCGGTGCGAGGACTTGCTTGGGGAAGAACATGGCGTTCATGCAAGTGAAGGCGTTGGCGAGTTCGCTACTGTACAACTA CCAGTTTCGGTTGGTGGAAGGTGGGCATGTGGTTAGGCCAACTAGTTCCATGGTGATGGTTATGAAAGATGGGCTGAAGACTAGGGTTTCCAAGAGGGTT CAGCATACCACCATTAATGCTACTGGCTTGCTACCTCATTAA
AA sequence Show only first row Show all	>Lus10022277 pacid=23139386 polypeptide=Lus10022277 locus=Lus10022277.g ID=Lus10022277.BGIv1.0 annot-version=v1.0 MLPSLFWNSSNYNLHDFLTQALKRSGGTFLLKGPSFINADYIVTSDAMNCHHIFSRNSANYHKGHDFKVIMEALGDGIFNVDGDSWKFQRQLLHSLLNNN EFESHTMRTLRLKMESTLSRVLDDASKLETVLDMQGVFKRFMFDNICMLVLGSDPCCLTVDGLSSSVCDKAFEDMEEAAVYRHVVPIPVWKLQNKLNIGA ERKLIRAWRIMDQFLYGHIKAKKEALLLANNNNVATNTINKAQKLDLLTQILVGKEEEDYKGGYYSNNNIVSQKSNKFLRDNAFTLIAAGRDTISSGLTW LLWMVATHPEVEKKIVDEIKQVMATRPRGGDIGGINTNDNNNVFLTKYELNKLVYLHAAVCETFRLYPPVPFEHKCAIETDVLPSGHVVERGTRFLFSIY SMGRMEETWGKDCMEFKPERWISDRGGIIHVPSYKFMTFLAGARTCLGKNMAFMQVKALASSLLYNYQFRLVEGGHVVRPTSSMVMVMKDGLKTRVSKRV QHTTINATGLLPH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10022277 [exp]	0	1
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013336 [exp]	1.0	0.9631
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10020559 [exp]	1.4	0.9552
AT1G03980		ATPCS2	phytochelatin synthase 2 (.1)		Lus10008241 [exp]	5.9	0.8976
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Lus10018360 [exp]	6.0	0.9264
AT2G26330		QRP1, ER	QUANTITATIVE RESISTANCE TO PLE...		Lus10038071 [exp]	6.9	0.9334
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10003833 [exp]	8.7	0.9235
AT4G34380			Transducin/WD40 repeat-like su...		Lus10038296 [exp]	9.2	0.9049
AT1G33500			unknown protein		Lus10013776 [exp]	9.5	0.8618
AT5G60880		BASL	breaking of asymmetry in the s...		Lus10034654 [exp]	12.1	0.8704
AT1G14430			glyoxal oxidase-related protei...		Lus10030798 [exp]	14.0	0.8865

Compare expression of checked genes

Lus10022277 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.