Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38470 114 / 2e-31 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT2G03340 100 / 2e-26 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT1G13960 100 / 2e-26 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT5G07100 94 / 2e-25 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2) AT2G37260 92 / 5e-24 WRKY DSL1, ATWRKY44, TTG2 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2) AT4G26640 91 / 4e-23 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT3G01080 91 / 4e-23 WRKY ATWRKY58, WRKY58 WRKY DNA-binding protein 58 (.1) AT4G26440 91 / 4e-23 WRKY ATWRKY34, MSP3, WRKY34 MICROSPORE-SPECIFIC PROMOTER 3, WRKY DNA-binding protein 34 (.1) AT5G56270 90 / 9e-23 WRKY ATWRKY2, WRKY2, WRKY23 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) AT2G30250 88 / 3e-22 WRKY ATWRKY25, WRKY25 WRKY DNA-binding protein 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001265 [exp] 125 / 3e-35 AT2G38470 394 / 2e-132 WRKY DNA-binding protein 33 (.1) Lus10012215 [exp] 124 / 4e-35 AT2G38470 393 / 2e-131 WRKY DNA-binding protein 33 (.1) Lus10042243 [exp] 110 / 3e-30 AT5G07100 323 / 5e-105 WRKY DNA-binding protein 26 (.1.2) Lus10026634 [exp] 102 / 3e-27 AT1G13960 409 / 1e-139 WRKY DNA-binding protein 4 (.1.2) Lus10030424 [exp] 100 / 1e-26 AT1G13960 421 / 7e-144 WRKY DNA-binding protein 4 (.1.2) Lus10019898 [exp] 99 / 3e-26 AT5G56270 229 / 1e-71 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10015377 [exp] 97 / 3e-25 AT2G03340 417 / 3e-141 WRKY DNA-binding protein 3 (.1) Lus10037131 [exp] 95 / 2e-24 AT2G03340 414 / 1e-141 WRKY DNA-binding protein 3 (.1) Lus10027139 [exp] 95 / 2e-24 AT5G56270 528 / 1e-179 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G128300 [exp] 121 / 5e-34 AT2G38470 377 / 8e-125 WRKY DNA-binding protein 33 (.1) Potri.013G153400 [exp] 117 / 1e-32 AT2G38470 329 / 5e-106 WRKY DNA-binding protein 33 (.1) Potri.019G123500 [exp] 112 / 2e-30 AT2G38470 299 / 3e-94 WRKY DNA-binding protein 33 (.1) Potri.006G105300 [exp] 107 / 7e-29 AT2G38470 341 / 4e-111 WRKY DNA-binding protein 33 (.1) Potri.008G091900 [exp] 104 / 6e-28 AT2G03340 407 / 7e-138 WRKY DNA-binding protein 3 (.1) Potri.010G163000 [exp] 102 / 3e-27 AT1G13960 431 / 5e-147 WRKY DNA-binding protein 4 (.1.2) Potri.006G133200 [exp] 100 / 1e-26 AT2G37260 330 / 3e-109 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2) Potri.016G083600 [exp] 100 / 1e-26 AT2G37260 337 / 4e-112 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2) Potri.011G169300 [exp] 94 / 6e-24 AT5G56270 588 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.001G361600 [exp] 93 / 8e-24 AT4G26640 540 / 0.0 WRKY family transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10022278 pacid=23139375 polypeptide=Lus10022278 locus=Lus10022278.g ID=Lus10022278.BGIv1.0 annot-version=v1.0 ATGAGGGAGAGCAGGAGACCGGACGACGGGTACAACTGGAGGAAGTACGACCAGAAGCAGGTGAAAGGGAGCGAGAATCCAAGGAGCTATTACAAATGCA CTTATCCCAACTGTCCCACGAAGAAAAAAGTGGAGAGGTCGTTGGATGGTCTAATCACTGAGATTGTTTACAAAGGCAGCAGCATAACCGTCCTAAGTCT CAGTCAACTAAGCAGCAGAGTGATTGCAGGAGAAATGGTGGGTTGA
AA sequence Show only first row Show all	>Lus10022278 pacid=23139375 polypeptide=Lus10022278 locus=Lus10022278.g ID=Lus10022278.BGIv1.0 annot-version=v1.0 MRESRRPDDGYNWRKYDQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGLITEIVYKGSSITVLSLSQLSSRVIAGEMVG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10022278 [exp]	0	1
AT1G54350		ABCD2	ATP-binding cassette D2, ABC t...		Lus10001839 [exp]	2.6	0.9209
AT3G19340			Protein of unknown function (D...		Lus10035127 [exp]	3.9	0.8895
AT3G14470			NB-ARC domain-containing disea...		Lus10004127 [exp]	7.1	0.8932
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Lus10000856 [exp]	8.0	0.8805
AT5G20140			SOUL heme-binding family prote...		Lus10013345 [exp]	9.4	0.9006
AT5G38520			alpha/beta-Hydrolases superfam...		Lus10003969 [exp]	12.2	0.8916
AT2G01870			unknown protein		Lus10030135 [exp]	13.9	0.8877
AT3G19340			Protein of unknown function (D...		Lus10031975 [exp]	15.4	0.8738
AT5G49320			Protein of unknown function (D...		Lus10016851 [exp]	16.2	0.8257
AT2G12400			unknown protein		Lus10008813 [exp]	16.3	0.8876

Compare expression of checked genes

Lus10022278 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.